SNRPA (Echinops telfairi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSETEG00000019205 T37020_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.928
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.928
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.928
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.928
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.928
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.928
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.928
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.928
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.783
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSETEP00000015600 RRM 12 82
ENSETEP00000015600 RRM 209 274

Links

Other RRM family RBPs
Other Echinops telfairi RBPs

115 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SNRPA Canis familiaris ENSCAFG00000005091 I 0.928
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.928
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.928
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.928
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.928
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.928
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.928
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.928
SNRPA Felis catus ENSFCAG00000016209 I 0.928
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.928
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.928
SNRPA Sus scrofa ENSSSCG00000002998 I 0.928
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.928
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.928
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.928
SNRPA Homo sapiens ENSG00000077312 D 0.928
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.928
LOC100068274 Equus caballus ENSECAG00000013141 I 0.928
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.928
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.928
Snrpa Mus musculus ENSMUSG00000061479 I 0.920
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.920
SNRPA Procavia capensis ENSPCAG00000012325 I 0.920
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.920
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.913
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.913
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.906
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.899
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.891
P45429 Xenopus laevis P45429 I 0.891
snrpa Danio rerio ENSDARG00000018890 I 0.891
AAH44979 Xenopus laevis AAH44979 I 0.891
CAA41021 Xenopus laevis CAA41021 I 0.891
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.877
SNRPA Oryzias latipes ENSORLG00000006536 I 0.877
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.835
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.833
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.833
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.826
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.820
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.812
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.812
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.812
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.812
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.804
AAEL014167 Aedes aegypti AAEL014167 I 0.797
AAEL002980 Aedes aegypti AAEL002980 I 0.797
AGAP011637 Anopheles gambiae AGAP011637 I 0.797
snf Drosophila mojavensis FBgn0069598 I 0.790
GJ16850 Drosophila virilis FBgn0204029 I 0.790
GK25839 Drosophila willistoni FBgn0227798 I 0.790
GH24608 Drosophila grimshawi FBgn0132064 I 0.790
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.790
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.790
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.783
GG18748 Drosophila erecta FBgn0110957 I 0.783
GL14287 Drosophila persimilis FBgn0151892 I 0.783
GM12396 Drosophila sechellia FBgn0167333 I 0.783
GE16390 Drosophila yakuba FBgn0233919 I 0.783
GF21334 Drosophila ananassae FBgn0098336 I 0.783
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.783
SNRPA Microcebus murinus ENSMICG00000009766 I 0.783
snf Drosophila melanogaster FBgn0003449 D 0.783
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.783
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.775
Gm5145 Mus musculus ENSMUSG00000071273 I 0.768
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.763
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.763
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.763
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.761
AAH84107 Xenopus laevis AAH84107 I 0.761
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.755
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.755
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.755
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.755
LOC100050830 Equus caballus ENSECAG00000018407 I 0.755
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.755
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.755
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.755
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.755
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.755
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.755
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.755
SNRPB2 Homo sapiens ENSG00000125870 I 0.755
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.755
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.755
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.755
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.755
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.755
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.755
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.755
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.755
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.755
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.755
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.755
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.755
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.755
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.748
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.748
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.748
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.748
AAH72799 Xenopus laevis AAH72799 I 0.748
snrpb2 Danio rerio ENSDARG00000039424 I 0.739
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.734
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.732
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.732
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.732
105398 Helobdella robusta 105398 I 0.725
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.725
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.725
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.719
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.717
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.710
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.710
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.703