CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCJAG00000014865
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000014865
T35614_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.906
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.906
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.906
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.906
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.906
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.906
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.906
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.906
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.746
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000027383
RRM
22
80
ELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR
ENSCJAP00000027383
RRM
153
218
LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAM
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
106 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SNRPA
Macropus eugenii
ENSMEUG00000002434
I
0.976
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.906
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.906
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.906
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.906
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.906
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.906
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.906
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.906
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.906
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.906
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.906
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.906
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.906
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.906
SNRPA
Homo sapiens
ENSG00000077312
D
0.906
SNRPA
Felis catus
ENSFCAG00000016209
I
0.906
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.906
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.906
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.906
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.899
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.899
SNRPA
Erinaceus europaeus
ENSEEUG00000015149
I
0.891
SNRPA
Tursiops truncatus
ENSTTRG00000007182
I
0.891
LOC100410790
Callithrix jacchus
ENSCJAG00000021962
I
0.884
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.884
SNRPA
Anolis carolinensis
ENSACAG00000013557
I
0.884
P45429
Xenopus laevis
P45429
I
0.862
CAA41021
Xenopus laevis
CAA41021
I
0.862
AAH44979
Xenopus laevis
AAH44979
I
0.862
SNRPA
Oryctolagus cuniculus
ENSOCUG00000024618
I
0.855
snrpa
Danio rerio
ENSDARG00000018890
I
0.855
SNRPA
Takifugu rubripes
ENSTRUG00000009703
I
0.855
SNRPA
Gasterosteus aculeatus
ENSGACG00000009838
I
0.848
SNRPA
Tetraodon nigroviridis
ENSTNIG00000007732
I
0.848
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.833
SNRPA
Echinops telfairi
ENSETEG00000019205
I
0.833
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.790
XP_001202981.1
Strongylocentrotus purpuratus
XP_001202981.1
I
0.786
XP_789234.2
Strongylocentrotus purpuratus
XP_789234.2
I
0.786
SNRPB2
Macropus eugenii
ENSMEUG00000016552
I
0.778
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.777
SNRPA
Loxodonta africana
ENSLAFG00000026568
I
0.775
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.775
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.775
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.775
AGAP011637
Anopheles gambiae
AGAP011637
I
0.768
ENSTGUG00000016203
Taeniopygia guttata
ENSTGUG00000016203
I
0.768
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.763
SPA_estExt_Genewise1Plus.C_890021
Daphnia pulex
SPA_estExt_Genewise1Plus.C_890021
I
0.761
AAEL014167
Aedes aegypti
AAEL014167
I
0.761
BGIBMGA012118
Bombyx mori
BGIBMGA012118
I
0.761
AAEL002980
Aedes aegypti
AAEL002980
I
0.761
CPIJ019134
Culex quinquefasciatus
CPIJ019134
I
0.754
GJ16850
Drosophila virilis
FBgn0204029
I
0.754
CpipJ_CPIJ019134
Culex pipiens
CpipJ_CPIJ019134
I
0.754
GK25839
Drosophila willistoni
FBgn0227798
I
0.754
e_gw.11.168.1
Nematostella vectensis
e_gw.11.168.1
I
0.754
GH24608
Drosophila grimshawi
FBgn0132064
I
0.754
snf
Drosophila mojavensis
FBgn0069598
I
0.754
SNRPA
Microcebus murinus
ENSMICG00000009766
I
0.754
GG18748
Drosophila erecta
FBgn0110957
I
0.746
GM12396
Drosophila sechellia
FBgn0167333
I
0.746
GF21334
Drosophila ananassae
FBgn0098336
I
0.746
GE16390
Drosophila yakuba
FBgn0233919
I
0.746
GL14287
Drosophila persimilis
FBgn0151892
I
0.746
GA18235-RA
Drosophila pseudoobscura
FBgn0078242
I
0.746
snf
Drosophila melanogaster
FBgn0003449
D
0.746
AAH84107
Xenopus laevis
AAH84107
I
0.739
Gm5145
Mus musculus
ENSMUSG00000071273
I
0.739
ENSCING00000009501
Ciona intestinalis
ENSCING00000009501
I
0.739
snrpb2
Xenopus tropicalis
ENSXETG00000003550
I
0.734
SNRPB2
Meleagris gallopavo
ENSMGAG00000006135
I
0.727
SNRPB2
Taeniopygia guttata
ENSTGUG00000002415
I
0.727
SNRPB2
Gallus gallus
ENSGALG00000008729
I
0.727
AAH72799
Xenopus laevis
AAH72799
I
0.727
SNRPB2
Ornithorhynchus anatinus
ENSOANG00000001237
I
0.719
SNRPB2
Microcebus murinus
ENSMICG00000015404
I
0.719
SNRPB2
Otolemur garnettii
ENSOGAG00000015146
I
0.719
Q3T0M6_BOVIN
Bos taurus
ENSBTAG00000027506
I
0.719
SNRPB2
Cavia porcellus
ENSCPOG00000005014
I
0.719
LOC477148
Canis familiaris
ENSCAFG00000005520
I
0.719
LOC100408625
Callithrix jacchus
ENSCJAG00000004811
I
0.719
SNRPB2
Ochotona princeps
ENSOPRG00000011587
I
0.719
SNRPB2
Loxodonta africana
ENSLAFG00000008775
I
0.719
SNRPB2
Homo sapiens
ENSG00000125870
I
0.719
SNRPB2
Anolis carolinensis
ENSACAG00000000582
I
0.719
SNRPB2
Macaca mulatta
ENSMMUG00000014493
I
0.719
Snrpb2
Mus musculus
ENSMUSG00000008333
I
0.719
SNRPB2
Pan troglodytes
ENSPTRG00000013271
I
0.719
SNRPB2
Tupaia belangeri
ENSTBEG00000012892
I
0.719
SNRPB2
Spermophilus tridecemlineatus
ENSSTOG00000009198
I
0.719
SNRPB2
Tarsius syrichta
ENSTSYG00000008857
I
0.719
SNRPB2
Tursiops truncatus
ENSTTRG00000006395
I
0.719
SNRPB2
Vicugna pacos
ENSVPAG00000004557
I
0.719
SNRPB2
Sus scrofa
ENSSSCG00000007081
I
0.719
SNRPB2
Sorex araneus
ENSSARG00000002681
I
0.719
ENSPPYG00000010723
Pongo pygmaeus
ENSPPYG00000010723
I
0.719
Ame_R017767
Ailuropoda melanoleuca
Ame_R017767
I
0.719
SNRPB2
Gorilla gorilla
ENSGGOG00000003937
I
0.719
LOC100050830
Equus caballus
ENSECAG00000018407
I
0.719
Snrpb2
Rattus norvegicus
ENSRNOG00000004967
I
0.719
SNRPB2
Myotis lucifugus
ENSMLUG00000008163
I
0.712
SNRPB2
Oryctolagus cuniculus
ENSOCUG00000001427
I
0.712
SNRPB2
Procavia capensis
ENSPCAG00000003156
I
0.712
e_gw1.1.761.1
Trichoplax adhaerens
e_gw1.1.761.1
I
0.710