ENSCJAG00000014865 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000014865 T35614_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.906
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.906
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.906
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.906
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.906
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.906
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.906
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.906
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.746
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000027383 RRM 22 80
ENSCJAP00000027383 RRM 153 218

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

106 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.976
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.906
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.906
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.906
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.906
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.906
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.906
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.906
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.906
SNRPA Canis familiaris ENSCAFG00000005091 I 0.906
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.906
SNRPA Sus scrofa ENSSSCG00000002998 I 0.906
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.906
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.906
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.906
SNRPA Homo sapiens ENSG00000077312 D 0.906
SNRPA Felis catus ENSFCAG00000016209 I 0.906
LOC100068274 Equus caballus ENSECAG00000013141 I 0.906
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.906
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.906
SNRPA Procavia capensis ENSPCAG00000012325 I 0.899
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.899
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.891
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.891
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.884
Snrpa Mus musculus ENSMUSG00000061479 I 0.884
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.884
P45429 Xenopus laevis P45429 I 0.862
CAA41021 Xenopus laevis CAA41021 I 0.862
AAH44979 Xenopus laevis AAH44979 I 0.862
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.855
snrpa Danio rerio ENSDARG00000018890 I 0.855
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.855
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.848
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.848
SNRPA Oryzias latipes ENSORLG00000006536 I 0.833
SNRPA Echinops telfairi ENSETEG00000019205 I 0.833
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.790
XP_001202981.1 Strongylocentrotus purpuratus XP_001202981.1 I 0.786
XP_789234.2 Strongylocentrotus purpuratus XP_789234.2 I 0.786
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.778
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.777
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.775
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.775
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.775
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.775
AGAP011637 Anopheles gambiae AGAP011637 I 0.768
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.768
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.763
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.761
AAEL014167 Aedes aegypti AAEL014167 I 0.761
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.761
AAEL002980 Aedes aegypti AAEL002980 I 0.761
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.754
GJ16850 Drosophila virilis FBgn0204029 I 0.754
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.754
GK25839 Drosophila willistoni FBgn0227798 I 0.754
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.754
GH24608 Drosophila grimshawi FBgn0132064 I 0.754
snf Drosophila mojavensis FBgn0069598 I 0.754
SNRPA Microcebus murinus ENSMICG00000009766 I 0.754
GG18748 Drosophila erecta FBgn0110957 I 0.746
GM12396 Drosophila sechellia FBgn0167333 I 0.746
GF21334 Drosophila ananassae FBgn0098336 I 0.746
GE16390 Drosophila yakuba FBgn0233919 I 0.746
GL14287 Drosophila persimilis FBgn0151892 I 0.746
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.746
snf Drosophila melanogaster FBgn0003449 D 0.746
AAH84107 Xenopus laevis AAH84107 I 0.739
Gm5145 Mus musculus ENSMUSG00000071273 I 0.739
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.739
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.734
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.727
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.727
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.727
AAH72799 Xenopus laevis AAH72799 I 0.727
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.719
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.719
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.719
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.719
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.719
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.719
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.719
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.719
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.719
SNRPB2 Homo sapiens ENSG00000125870 I 0.719
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.719
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.719
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.719
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.719
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.719
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.719
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.719
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.719
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.719
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.719
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.719
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.719
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.719
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.719
LOC100050830 Equus caballus ENSECAG00000018407 I 0.719
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.719
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.712
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.712
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.712
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.710