CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMMUG00000017392
(
Macaca mulatta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMMUG00000017392
T38946_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPH2
M151_0.6
Homo sapiens
GGGAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00160
0.757
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000022893
RRM
15
80
VHGLPWSCSAILFFFSDCKIQNEAQGIHFIYTREGRLGGKAFVELESEDEVKLAKKDRETMGHSFV
ENSMMUP00000022893
RRM
110
176
VQLRGLPFECSKEEIAQFFSRLEIVPNGLTLPVDQGRSTGEAFVQSASQEITEKALKHKEITGHKYI
ENSMMUP00000022893
RRM
280
347
VHMCGLPYRATENDICNFFSLFNPVRVHIETSPDGTVTGEADVEFATHEDAVAAMSKDKANMQHSDVE
Links
Other
RRM
family RBPs
Other
Macaca mulatta
RBPs
82 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPH1
Canis familiaris
ENSCAFG00000000336
I
0.814
HNRNPH1
Sus scrofa
ENSSSCG00000014022
I
0.814
HNRNPH1
Gorilla gorilla
ENSGGOG00000025844
I
0.814
HNRNPH1
Bos taurus
ENSBTAG00000009389
I
0.814
HNRNPH1
Homo sapiens
ENSG00000169045
I
0.814
HNRNPH1
Pan troglodytes
ENSPTRG00000017617
I
0.814
ENSPPYG00000016121
Pongo pygmaeus
ENSPPYG00000016121
I
0.814
Ame_R009346
Ailuropoda melanoleuca
Ame_R009346
I
0.814
HNRNPH1
Oryctolagus cuniculus
ENSOCUG00000017150
I
0.814
HNRNPH1
Callithrix jacchus
ENSCJAG00000009931
I
0.814
Hnrnph1
Dipodomys ordii
ENSDORG00000005453
I
0.814
Hnrph1
Rattus norvegicus
ENSRNOG00000003399
I
0.814
HNRNPH1
Cavia porcellus
ENSCPOG00000001485
I
0.814
Hnrnph1
Mus musculus
ENSMUSG00000007850
I
0.814
HNRNPH1
Echinops telfairi
ENSETEG00000011303
I
0.813
HNRNPH1
Loxodonta africana
ENSLAFG00000015766
I
0.810
ENSOANG00000010222
Ornithorhynchus anatinus
ENSOANG00000010222
I
0.805
ENSMODG00000009436
Monodelphis domestica
ENSMODG00000009436
I
0.805
HNRNPH2
Tarsius syrichta
ENSTSYG00000007811
I
0.795
HNRNPH2
Tursiops truncatus
ENSTTRG00000012786
I
0.795
LOC100057665
Equus caballus
ENSECAG00000023575
I
0.795
HNRNPH2
Cavia porcellus
ENSCPOG00000012405
I
0.795
HNRNPH2
Canis familiaris
ENSCAFG00000017693
I
0.795
HNRNPH2
Echinops telfairi
ENSETEG00000008416
I
0.795
HNRH2_BOVIN
Bos taurus
ENSBTAG00000007499
I
0.795
Ame_R018226
Ailuropoda melanoleuca
Ame_R018226
I
0.795
HNRNPH2
Sorex araneus
ENSSARG00000014182
I
0.795
ENSOCUG00000006387
Oryctolagus cuniculus
ENSOCUG00000006387
I
0.795
HNRNPH2
Ochotona princeps
ENSOPRG00000007985
I
0.795
ENSOCUG00000010629
Oryctolagus cuniculus
ENSOCUG00000010629
I
0.795
HNRNPH2
Pteropus vampyrus
ENSPVAG00000001571
I
0.795
HNRNPH2
Homo sapiens
ENSG00000126945
D
0.790
ENSPPYG00000020553
Pongo pygmaeus
ENSPPYG00000020553
I
0.790
HNRNPH2
Procavia capensis
ENSPCAG00000003333
I
0.790
HNRNPH2
Callithrix jacchus
ENSCJAG00000004908
I
0.790
HNRNPH2
Gorilla gorilla
ENSGGOG00000008096
I
0.790
HNRNPH2
Pan troglodytes
ENSPTRG00000022107
I
0.790
HNRNPH2
Macaca mulatta
ENSMMUG00000019580
I
0.790
Hnrnph2
Rattus norvegicus
ENSRNOG00000011661
I
0.790
Hnrnph2
Mus musculus
ENSMUSG00000045427
I
0.790
ENSMGAG00000007328
Meleagris gallopavo
ENSMGAG00000007328
I
0.786
Q5F3I8_CHICK
Gallus gallus
ENSGALG00000005955
I
0.786
HNRNPH2
Felis catus
ENSFCAG00000015400
I
0.760
hnrnph1l
Danio rerio
ENSDARG00000005551
I
0.757
hnrnph2
Xenopus tropicalis
ENSXETG00000018321
I
0.757
LOC100067495
Equus caballus
ENSECAG00000014429
I
0.752
ENSCHOG00000003841
Choloepus hoffmanni
ENSCHOG00000003841
I
0.752
HNRNPH1
Tarsius syrichta
ENSTSYG00000006417
I
0.752
ENSACAG00000016323
Anolis carolinensis
ENSACAG00000016323
I
0.752
AAH77770
Xenopus laevis
AAH77770
I
0.752
AAI10708
Xenopus laevis
AAI10708
I
0.752
HNRNPH1
Tursiops truncatus
ENSTTRG00000000470
I
0.746
HNRNPH1
Gasterosteus aculeatus
ENSGACG00000018352
I
0.743
HNRNPH1
Takifugu rubripes
ENSTRUG00000001031
I
0.743
HNRNPH1
Sorex araneus
ENSSARG00000003024
I
0.743
AAH70969
Xenopus laevis
AAH70969
I
0.738
HNRNPH1
Felis catus
ENSFCAG00000001204
I
0.733
HNRNPH1
Oryzias latipes
ENSORLG00000006932
I
0.729
HNRNPH1
Taeniopygia guttata
ENSTGUG00000001085
I
0.728
HNRNPF
Sorex araneus
ENSSARG00000010059
I
0.724
ENSDORG00000005431
Dipodomys ordii
ENSDORG00000005431
I
0.719
Ame_R005224
Ailuropoda melanoleuca
Ame_R005224
I
0.719
Hnrnpf
Rattus norvegicus
ENSRNOG00000014562
I
0.719
HNRNPF
Pteropus vampyrus
ENSPVAG00000011646
I
0.719
Hnrnpf
Mus musculus
ENSMUSG00000042079
I
0.719
ENSOCUG00000024719
Oryctolagus cuniculus
ENSOCUG00000024719
I
0.719
HNRPF_BOVIN
Bos taurus
ENSBTAG00000008853
I
0.719
HNRNPH1
Otolemur garnettii
ENSOGAG00000012631
I
0.719
HNRNPF
Callithrix jacchus
ENSCJAG00000016238
I
0.719
HNRNPF
Canis familiaris
ENSCAFG00000007044
I
0.719
HNRNPF
Gorilla gorilla
ENSGGOG00000010867
I
0.714
HNRNPF
Macaca mulatta
ENSMMUG00000020982
I
0.714
HNRNPF
Microcebus murinus
ENSMICG00000001490
I
0.714
HNRNPF
Otolemur garnettii
ENSOGAG00000013734
I
0.714
ENSPPYG00000002212
Pongo pygmaeus
ENSPPYG00000002212
I
0.714
HNRNPF
Pan troglodytes
ENSPTRG00000002446
I
0.714
LOC100050002
Equus caballus
ENSECAG00000003229
I
0.714
HNRNPF
Cavia porcellus
ENSCPOG00000003678
I
0.714
HNRNPF
Homo sapiens
ENSG00000169813
I
0.714
HNRNPF
Sus scrofa
ENSSSCG00000010203
I
0.714
HNRNPF
Loxodonta africana
ENSLAFG00000000424
I
0.705
HNRNPF
Procavia capensis
ENSPCAG00000013169
I
0.705