ENSOCUG00000010894 (Oryctolagus cuniculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOCUG00000010894 T39686_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.803
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.803
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.803
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.803
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.803
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.803
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.803
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.803
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.803
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.803
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000009368 RRM 17 84
ENSOCUP00000009368 RRM 116 179

Links

Other RRM family RBPs
Other Oryctolagus cuniculus RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.811
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.811
AAI28932 Xenopus laevis AAI28932 I 0.803
AAI23123 Xenopus laevis AAI23123 I 0.803
AAH42354 Xenopus laevis AAH42354 I 0.803
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.803
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.803
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.803
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.803
srsf1a Danio rerio ENSDARG00000057691 I 0.803
LOC100056763 Equus caballus ENSECAG00000016654 I 0.803
SRSF1 Homo sapiens ENSG00000136450 D 0.803
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.803
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.803
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.803
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.803
Srsf1 Mus musculus ENSMUSG00000018379 I 0.803
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.803
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.803
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.803
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.803
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.803
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.803
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.803
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.803
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.795
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.791
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.788
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.788
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.788
SRSF1 Sorex araneus ENSSARG00000010949 I 0.788
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.788
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.788
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.788
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.788
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.788
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.788
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.780
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.780
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.765
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.765
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.758
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.735
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.727
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.727
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.727
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.727
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.722
ISCW014398 Ixodes scapularis ISCW014398 I 0.720
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.720
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.712
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.712