PABPN1 (Procavia capensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPCAG00000005902 T40331_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.857
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000005468 RRM 182 245

Links

Other RRM family RBPs
Other Procavia capensis RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.857
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.857
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.857
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.857
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.857
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.857
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.857
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.857
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.857
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.857
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.857
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.857
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.857
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.857
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.857
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.857
LOC100055599 Equus caballus ENSECAG00000011652 I 0.857
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.857
PABPN1 Homo sapiens ENSG00000100836 D 0.857
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.857
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.843
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.843
AAH45063 Xenopus laevis AAH45063 I 0.843
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.829
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.829
AAR26262 Xenopus laevis AAR26262 I 0.829
AAG36902 Xenopus laevis AAG36902 I 0.829
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.829
AAH73657 Xenopus laevis AAH73657 I 0.829
Q9DDY9 Xenopus laevis Q9DDY9 I 0.829
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.829
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.814
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.800
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.786
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.785
pabpn1 Danio rerio ENSDARG00000045373 I 0.775
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.761
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.761
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.761
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.761
LOAG_03634 Loa loa LOAG_03634 I 0.746
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.746
Bm1_48895 Brugia malayi Bm1_48895 I 0.746
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.729
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.704
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.700
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.700
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.700