e_gw.341.11.1 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw.341.11.1 T50188_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.800
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.341.11.1 RRM 1 65

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

81 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.901
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.831
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.829
pabpn1 Danio rerio ENSDARG00000045373 I 0.817
AAH73657 Xenopus laevis AAH73657 I 0.814
AAH45063 Xenopus laevis AAH45063 I 0.814
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.814
AAG36902 Xenopus laevis AAG36902 I 0.814
AAR26262 Xenopus laevis AAR26262 I 0.814
Q9DDY9 Xenopus laevis Q9DDY9 I 0.814
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.803
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.803
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.803
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.803
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.800
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.800
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.800
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.800
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.800
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.800
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.800
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.800
PABPN1 Homo sapiens ENSG00000100836 D 0.800
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.800
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.800
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.800
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.800
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.800
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.800
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.800
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.800
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.800
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.800
LOC100055599 Equus caballus ENSECAG00000011652 I 0.800
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.800
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.800
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.800
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.800
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.800
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.786
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.786
PHUM037550 Pediculus humanus PHUM037550 I 0.786
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.786
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.786
PABPN1 Procavia capensis ENSPCAG00000005902 I 0.785
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.771
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.771
LOAG_03634 Loa loa LOAG_03634 I 0.761
Bm1_48895 Brugia malayi Bm1_48895 I 0.761
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.761
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.757
156918 Helobdella robusta 156918 I 0.757
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.743
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.743
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.732
CPIJ004581 Culex quinquefasciatus CPIJ004581 I 0.729
CpipJ_CPIJ004581 Culex pipiens CpipJ_CPIJ004581 I 0.729
AAEL015143 Aedes aegypti AAEL015143 I 0.729
AGAP005117 Anopheles gambiae AGAP005117 I 0.729
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.718
Smp_007630 Schistosoma mansoni Smp_007630 I 0.714
GH21908 Drosophila grimshawi FBgn0129369 I 0.714
GM21011 Drosophila sechellia FBgn0175892 I 0.714
GD10545 Drosophila simulans FBgn0182316 I 0.714
GK23192 Drosophila willistoni FBgn0225154 I 0.714
GJ22134 Drosophila virilis FBgn0209248 I 0.714
GG23338 Drosophila erecta FBgn0115489 I 0.714
GI19259 Drosophila mojavensis FBgn0141998 I 0.714
GF13666 Drosophila ananassae FBgn0090694 I 0.714
Pabp2 Drosophila melanogaster FBgn0005648 I 0.714
Sjc_0053490 Schistosoma japonicum Sjc_0053490 I 0.714
Pabp2 Drosophila yakuba FBgn0068105 I 0.714
GA15278-RA Drosophila pseudoobscura FBgn0075302 I 0.714
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.704
CRE07990 Caenorhabditis remanei CRE07990 I 0.700
e_gw1.29.77.1 Phycomyces blakesleeanus e_gw1.29.77.1 I 0.700
CJA15148 Caenorhabditis japonica CJA15148 I 0.700
CBG03741 Caenorhabditis briggsae CBG03741 I 0.700
CBN00953 Caenorhabditis brenneri CBN00953 I 0.700
GL17107 Drosophila persimilis FBgn0154711 I 0.700
CBN10290 Caenorhabditis brenneri CBN10290 I 0.700