estExt_fgenesh1_pm.C_1750006 (Capitella teleta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh1_pm.C_1750006 T50702_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.800
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pm.C_1750006 RRM 46 115

Links

Other RRM family RBPs
Other Capitella teleta RBPs

63 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.900
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.829
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.829
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.814
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.803
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.800
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.800
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.800
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.800
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.800
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.800
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.800
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.800
LOC100055599 Equus caballus ENSECAG00000011652 I 0.800
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.800
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.800
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.800
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.800
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.800
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.800
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.800
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.800
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.800
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.800
PABPN1 Homo sapiens ENSG00000100836 D 0.800
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.800
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.789
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.786
AAG36902 Xenopus laevis AAG36902 I 0.786
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.786
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.786
Q9DDY9 Xenopus laevis Q9DDY9 I 0.786
AAR26262 Xenopus laevis AAR26262 I 0.786
AAH73657 Xenopus laevis AAH73657 I 0.786
AAH45063 Xenopus laevis AAH45063 I 0.786
pabpn1 Danio rerio ENSDARG00000045373 I 0.775
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.775
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.771
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.771
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.771
156918 Helobdella robusta 156918 I 0.771
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.771
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.771
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.761
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.761
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.761
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.761
PHUM037550 Pediculus humanus PHUM037550 I 0.743
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.743
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.743
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.743
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.732
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.732
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.718
Bm1_48895 Brugia malayi Bm1_48895 I 0.718
LOAG_03634 Loa loa LOAG_03634 I 0.718
CJA15148 Caenorhabditis japonica CJA15148 I 0.714
CRE07990 Caenorhabditis remanei CRE07990 I 0.714
CBN00953 Caenorhabditis brenneri CBN00953 I 0.714
CBG03741 Caenorhabditis briggsae CBG03741 I 0.714
CBN10290 Caenorhabditis brenneri CBN10290 I 0.714
PABPN1 Procavia capensis ENSPCAG00000005902 I 0.700
CBN16301 Caenorhabditis brenneri CBN16301 I 0.700