GA15278-RA (Drosophila pseudoobscura)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0075302 T43138_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.786
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0276575 RRM 98 167

Links

Other RRM family RBPs
Other Drosophila pseudoobscura RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GD10545 Drosophila simulans FBgn0182316 I 1.000
Pabp2 Drosophila melanogaster FBgn0005648 I 1.000
GF13666 Drosophila ananassae FBgn0090694 I 1.000
GM21011 Drosophila sechellia FBgn0175892 I 1.000
Pabp2 Drosophila yakuba FBgn0068105 I 1.000
GG23338 Drosophila erecta FBgn0115489 I 1.000
GL17107 Drosophila persimilis FBgn0154711 I 0.986
GK23192 Drosophila willistoni FBgn0225154 I 0.986
GH21908 Drosophila grimshawi FBgn0129369 I 0.986
GJ22134 Drosophila virilis FBgn0209248 I 0.986
GI19259 Drosophila mojavensis FBgn0141998 I 0.986
CPIJ004581 Culex quinquefasciatus CPIJ004581 I 0.971
AAEL015143 Aedes aegypti AAEL015143 I 0.971
CpipJ_CPIJ004581 Culex pipiens CpipJ_CPIJ004581 I 0.971
AGAP005117 Anopheles gambiae AGAP005117 I 0.957
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.843
PHUM037550 Pediculus humanus PHUM037550 I 0.814
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.800
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.786
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.786
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.786
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.786
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.786
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.786
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.786
PABPN1 Homo sapiens ENSG00000100836 D 0.786
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.786
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.786
LOC100055599 Equus caballus ENSECAG00000011652 I 0.786
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.786
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.786
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.786
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.786
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.786
Q9DDY9 Xenopus laevis Q9DDY9 I 0.786
AAG36902 Xenopus laevis AAG36902 I 0.786
AAH45063 Xenopus laevis AAH45063 I 0.786
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.786
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.786
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.786
AAH73657 Xenopus laevis AAH73657 I 0.786
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.786
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.786
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.786
AAR26262 Xenopus laevis AAR26262 I 0.786
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.786
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.786
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.771
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.771
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.761
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.761
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.761
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.761
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.761
pabpn1 Danio rerio ENSDARG00000045373 I 0.761
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.757
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.757
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.746
LOAG_03634 Loa loa LOAG_03634 I 0.746
Bm1_48895 Brugia malayi Bm1_48895 I 0.746
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.743
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.743
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.743
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.714
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.704
CBG03741 Caenorhabditis briggsae CBG03741 I 0.700
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.700
estExt_Genewise1.C_11041 Mucor circinelloides estExt_Genewise1.C_11041 N 0.700
e_gw1.29.77.1 Phycomyces blakesleeanus e_gw1.29.77.1 I 0.700
Sjc_0053490 Schistosoma japonicum Sjc_0053490 I 0.700
Smp_007630 Schistosoma mansoni Smp_007630 I 0.700
CBN10290 Caenorhabditis brenneri CBN10290 I 0.700
CBN00953 Caenorhabditis brenneri CBN00953 I 0.700
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.700
CRE07990 Caenorhabditis remanei CRE07990 I 0.700