eugene.1500010066 (Ostreococcus lucimarinus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 eugene.1500010066 T51730_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
eugene.1500010066 RRM 21 88

Links

Other RRM family RBPs
Other Ostreococcus lucimarinus RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
1600010087 Ostreococcus tauri 1600010087 N 0.897
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.838
SB01G003790 Sorghum bicolor Sb01g003790 N 0.809
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.809
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.809
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.809
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.809
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.794
PK21780.1 Cannabis sativa PK21780.1 N 0.794
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.794
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.794
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.794
29868.m000351 Ricinus communis 29868.m000351 N 0.794
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.794
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.794
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.794
ppa013407m Prunus persica ppa013407m N 0.794
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.794
MDP0000185506 Malus x domestica MDP0000185506 N 0.794
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.794
ppa013405m Prunus persica ppa013405m N 0.794
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.794
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.779
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.779
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.768
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.768
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.765
mgf016428m Mimulus guttatus mgf016428m N 0.754
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.754
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.754
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.754
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.750
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.750
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.750
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.739
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.735
MDP0000916880 Malus x domestica MDP0000916880 N 0.735
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.725
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.721
ISCW024082 Ixodes scapularis ISCW024082 N 0.721
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.710
PITG_10282 Phytophthora infestans PITG_10282 N 0.710
s_454910 Phytophthora sojae s_454910 N 0.710
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.706
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.706
AAEL005909 Aedes aegypti AAEL005909 N 0.706
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.706
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.706
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.706
Smp_032060 Schistosoma mansoni Smp_032060 N 0.706
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.706
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.706
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.706
PHUM617060 Pediculus humanus PHUM617060 N 0.706