gw1.1.1171.1 (Sporobolomyces roseus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.1.1171.1 T53048_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.1.1171.1 RRM 25 95

Links

Other RRM family RBPs
Other Sporobolomyces roseus RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PGTG_01720 Puccinia graminis PGTG_01720 N 0.803
e_gw1.40.70.1 Melampsora laricis populina e_gw1.40.70.1 N 0.803
fgenesh1_pg.C_scaffold_1000747 Cryphonectria parasitica fgenesh1_pg.C_scaffold_1000747 N 0.789
gwh2.1.1054.1 Phanerochaete chrysosporium gwh2.1.1054.1 N 0.766
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.761
cbc2 Schizosaccharomyces pombe SPBC13A2.01c N 0.761
SJAG_01064 Schizosaccharomyces japonicus SJAG_01064 N 0.761
estExt_fgenesh1_pm.C_20437 Schizophyllum commune estExt_fgenesh1_pm.C_20437 N 0.753
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.746
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.746
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.746
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.746
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.746
FGSG_05488 Fusarium graminearum FGSG_05488 N 0.746
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.746
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.746
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.746
An12g03930 Aspergillus niger CADANGAG00009835 N 0.732
fgenesh1_pm.00772_#_82 Aspergillus carbonarius fgenesh1_pm.00772_#_82 N 0.732
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.732
SOCG_01831 Schizosaccharomyces octosporus SOCG_01831 N 0.732
NCU00210 Neurospora crassa NCU00210 N 0.732
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.732
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.732
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.732
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.732
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.732
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.732
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.732
e_gw1.80.70.1 Selaginella moellendorfii e_gw1.80.70.1 N 0.732
e_gw1.121.83.1 Postia placenta e_gw1.121.83.1 N 0.727
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.718
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.718
VDBG_06810 Verticillium albo atrum VDBG_06810 N 0.718
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.718
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.718
SPOG_01217 Schizosaccharomyces cryophilus SPOG_01217 N 0.718
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.718
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.718
VDAG_05874 Verticillium dahliae VDAG_05874 N 0.718
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.718
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.718
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.718
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.718
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.718
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.718
MCYG_04468 Microsporum canis MCYG_04468 N 0.718
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.718
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.718
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.718
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.718
TERG_03424 Trichophyton rubrum TERG_03424 N 0.718
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.718
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.718
estExt_fgenesh2_kg.C_120041 Serpula lacrymans estExt_fgenesh2_kg.C_120041 N 0.714
gw1.1.2136.1 Pleurotus ostreatus gw1.1.2136.1 N 0.714
estExt_Genewise1_worm.C_60324 Laccaria bicolor estExt_Genewise1_worm.C_60324 N 0.714
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.704
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.704
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.704
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.704
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.704