CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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nasonia_NCBI_hmm250744
(
Nasonia vitripennis
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
nasonia_NCBI_hmm250744
T61919_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm250744
YTH
521
611
LFFSVNGSGHFCGMAQMVSSVDYKSNSSVWSQDKWKGQFRVRWIYVKDVPNVQLRHIKLENNENKPVTNSRDAQEVPHAKGVQVLRILHSY
Links
Other
YTH
family RBPs
Other
Nasonia vitripennis
RBPs
136 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm12284
Tribolium castaneum
amel4_ncbi_hmm12284
N
0.956
amel4_ncbi_hmm12284
Apis mellifera
amel4_ncbi_hmm12284
N
0.956
BGIBMGA007551
Bombyx mori
BGIBMGA007551
N
0.879
PHUM167190
Pediculus humanus
PHUM167190
N
0.835
estExt_fgenesh1_pm.C_4090006
Capitella teleta
estExt_fgenesh1_pm.C_4090006
N
0.835
DGIL_AUG5s6515g6t1
Acyrtosiphon pisum
DGIL_AUG5s6515g6t1
N
0.802
AGAP003817
Anopheles gambiae
AGAP003817
N
0.802
GK12904
Drosophila willistoni
FBgn0214913
N
0.802
CpipJ_CPIJ011115
Culex pipiens
CpipJ_CPIJ011115
N
0.791
GM17761
Drosophila sechellia
FBgn0172669
N
0.791
152141
Helobdella robusta
152141
N
0.791
CpipJ_CPIJ011116
Culex pipiens
CpipJ_CPIJ011116
N
0.791
GD18245
Drosophila simulans
FBgn0189779
N
0.791
GG12295
Drosophila erecta
FBgn0104586
N
0.791
CG6422
Drosophila melanogaster
FBgn0039261
N
0.791
CPIJ011116
Culex quinquefasciatus
CPIJ011116
N
0.791
CPIJ011115
Culex quinquefasciatus
CPIJ011115
N
0.791
GA19581-RA
Drosophila pseudoobscura
FBgn0079577
N
0.780
GJ14120
Drosophila virilis
FBgn0201338
N
0.780
GE10748
Drosophila yakuba
FBgn0228591
N
0.780
GF18592
Drosophila ananassae
FBgn0095610
N
0.780
GL21952
Drosophila persimilis
FBgn0159545
N
0.780
AAEL005544
Aedes aegypti
AAEL005544
N
0.769
GH22368
Drosophila grimshawi
FBgn0129826
N
0.769
XR_023164.1
Pan troglodytes
ENSPTRG00000000439
N
0.747
YTHDF2
Otolemur garnettii
ENSOGAG00000014648
N
0.747
YTHDF2
Macaca mulatta
ENSMMUG00000011391
N
0.747
YTHDF2
Gorilla gorilla
ENSGGOG00000024069
N
0.747
YTHDF2
Monodelphis domestica
ENSMODG00000010973
N
0.747
62837
Helobdella robusta
62837
N
0.747
YTHDF2
Loxodonta africana
ENSLAFG00000030451
N
0.747
YTHDF2
Tursiops truncatus
ENSTTRG00000013603
N
0.747
YTHDF2
Myotis lucifugus
ENSMLUG00000012606
N
0.747
Ythdf2
Mus musculus
ENSMUSG00000040025
N
0.747
YTHDF2
Oryctolagus cuniculus
ENSOCUG00000010612
N
0.747
YTHDF2
Procavia capensis
ENSPCAG00000007587
N
0.747
YTHDF2
Macropus eugenii
ENSMEUG00000016488
N
0.747
YTHDF2
Microcebus murinus
ENSMICG00000003729
N
0.747
YTHDF2
Homo sapiens
ENSG00000198492
N
0.747
YTHDF2
Cavia porcellus
ENSCPOG00000019907
N
0.747
yth2
Danio rerio
ENSDARG00000014498
N
0.747
Ame_R001131
Ailuropoda melanoleuca
Ame_R001131
N
0.747
Ythdf2
Dipodomys ordii
ENSDORG00000016564
N
0.747
YTHDF2
Canis familiaris
ENSCAFG00000011700
N
0.747
YTHDF2
Sorex araneus
ENSSARG00000001187
N
0.747
YTHDF2
Callithrix jacchus
ENSCJAG00000009804
N
0.747
YTHDF2
Choloepus hoffmanni
ENSCHOG00000000357
N
0.747
AAH68959
Xenopus laevis
AAH68959
N
0.747
YTHD2_BOVIN
Bos taurus
ENSBTAG00000015771
N
0.747
LOC100070667
Equus caballus
ENSECAG00000023108
N
0.747
YTHDF2
Ochotona princeps
ENSOPRG00000017111
N
0.747
YTHDF2
Felis catus
ENSFCAG00000012446
N
0.747
YTHDF2
Tarsius syrichta
ENSTSYG00000004178
N
0.747
YTHDF2
Echinops telfairi
ENSETEG00000017614
N
0.747
e_gw.462.3.1
Branchiostoma floridae
e_gw.462.3.1
N
0.747
YTHDF2
Pteropus vampyrus
ENSPVAG00000017224
N
0.747
YTHDF2
Erinaceus europaeus
ENSEEUG00000011398
N
0.747
YTHDF2
Oryzias latipes
ENSORLG00000014323
N
0.736
YTHDF2
Taeniopygia guttata
ENSTGUG00000017347
N
0.736
YTHDF2
Ornithorhynchus anatinus
ENSOANG00000006124
N
0.736
YTHDF1
Bos taurus
ENSBTAG00000010383
N
0.736
ythdf2
Xenopus tropicalis
ENSXETG00000020636
N
0.736
YTHDF2
Anolis carolinensis
ENSACAG00000010846
N
0.736
YTHDF2
Tetraodon nigroviridis
ENSTNIG00000017263
N
0.736
AAH78013
Xenopus laevis
AAH78013
N
0.736
YTHDF2
Meleagris gallopavo
ENSMGAG00000001610
N
0.736
YTHDF2
Gasterosteus aculeatus
ENSGACG00000009603
N
0.736
LOC419583
Gallus gallus
ENSGALG00000000959
N
0.736
YTHDF2
Takifugu rubripes
ENSTRUG00000011923
N
0.736
YTHDF1
Cavia porcellus
ENSCPOG00000010202
N
0.736
Ythdf1
Rattus norvegicus
ENSRNOG00000027015
N
0.725
YTHDF1
Tursiops truncatus
ENSTTRG00000001804
N
0.725
YTHDF1
Pan troglodytes
ENSPTRG00000013730
N
0.725
ENSPPYG00000011226
Pongo pygmaeus
ENSPPYG00000011226
N
0.725
YTHDF1
Procavia capensis
ENSPCAG00000002452
N
0.725
YTHDF1
Loxodonta africana
ENSLAFG00000008884
N
0.725
YTHDF1
Erinaceus europaeus
ENSEEUG00000007461
N
0.725
YTHDF1
Homo sapiens
ENSG00000149658
N
0.725
LOC100060217
Equus caballus
ENSECAG00000019475
N
0.725
Ame_R014316
Ailuropoda melanoleuca
Ame_R014316
N
0.725
YTHDF1
Canis familiaris
ENSCAFG00000012772
N
0.725
A6MKQ0_CALJA
Callithrix jacchus
ENSCJAG00000010056
N
0.725
YTHDF1
Ochotona princeps
ENSOPRG00000001758
N
0.725
YTHDF1
Gorilla gorilla
ENSGGOG00000008340
N
0.725
YTHDF1
Oryctolagus cuniculus
ENSOCUG00000012780
N
0.725
YTHDF1
Otolemur garnettii
ENSOGAG00000000480
N
0.725
Ythdf1
Mus musculus
ENSMUSG00000038848
N
0.725
YTHDF1
Macaca mulatta
ENSMMUG00000009227
N
0.725
ENSACAG00000005560
Anolis carolinensis
ENSACAG00000005560
N
0.725
YTHDF1
Myotis lucifugus
ENSMLUG00000002241
N
0.725
ENSTNIG00000012698
Tetraodon nigroviridis
ENSTNIG00000012698
N
0.714
Aqu1.220420
Amphimedon queenslandica
Aqu1.220420
N
0.714
YTHDF1
Taeniopygia guttata
ENSTGUG00000007565
N
0.714
ENSOANG00000003723
Ornithorhynchus anatinus
ENSOANG00000003723
N
0.714
ENSMODG00000016842
Monodelphis domestica
ENSMODG00000016842
N
0.714
Q5ZME7_CHICK
Gallus gallus
ENSGALG00000005745
N
0.714
Ythdf1
Dipodomys ordii
ENSDORG00000002879
N
0.714
YTHDF1
Pteropus vampyrus
ENSPVAG00000017568
N
0.714
ENSMGAG00000006139
Meleagris gallopavo
ENSMGAG00000006139
N
0.714
Ythdf3
Dipodomys ordii
ENSDORG00000014699
N
0.703
ENSTBEG00000005747
Tupaia belangeri
ENSTBEG00000005747
N
0.703
ythdf3
Danio rerio
ENSDARG00000057939
N
0.703
e_gw.90.29.1
Nematostella vectensis
e_gw.90.29.1
N
0.703
ENSETEG00000007144
Echinops telfairi
ENSETEG00000007144
N
0.703
Q5ZLM1_CHICK
Gallus gallus
ENSGALG00000015505
N
0.703
ENSSARG00000007626
Sorex araneus
ENSSARG00000007626
N
0.703
ENSG00000185728
Homo sapiens
ENSG00000185728
N
0.703
ENSCSAVG00000010987
Ciona savignyi
ENSCSAVG00000010987
N
0.703
Ame_R018798
Ailuropoda melanoleuca
Ame_R018798
N
0.703
ENSCAFG00000007215
Canis familiaris
ENSCAFG00000007215
N
0.703
YTHDF3
Bos taurus
ENSBTAG00000018557
N
0.703
ENSACAG00000016837
Anolis carolinensis
ENSACAG00000016837
N
0.703
ENSCHOG00000010194
Choloepus hoffmanni
ENSCHOG00000010194
N
0.703
ENSCING00000004166
Ciona intestinalis
ENSCING00000004166
N
0.703
ENSCPOG00000002961
Cavia porcellus
ENSCPOG00000002961
N
0.703
YTHDF3
Callithrix jacchus
ENSCJAG00000009217
N
0.703
LOC776373
Gallus gallus
ENSGALG00000019473
N
0.703
ENSGGOG00000027681
Gorilla gorilla
ENSGGOG00000027681
N
0.703
ENSVPAG00000008104
Vicugna pacos
ENSVPAG00000008104
N
0.703
ENSPCAG00000016282
Procavia capensis
ENSPCAG00000016282
N
0.703
ENSOCUG00000008723
Oryctolagus cuniculus
ENSOCUG00000008723
N
0.703
ENSTTRG00000014564
Tursiops truncatus
ENSTTRG00000014564
N
0.703
ENSPPYG00000018626
Pongo pygmaeus
ENSPPYG00000018626
N
0.703
ENSPVAG00000002740
Pteropus vampyrus
ENSPVAG00000002740
N
0.703
ENSTSYG00000009117
Tarsius syrichta
ENSTSYG00000009117
N
0.703
XR_024462.1
Pan troglodytes
ENSPTRG00000030993
N
0.703
Ythdf3
Mus musculus
ENSMUSG00000047213
N
0.703
Ythdf3
Rattus norvegicus
ENSRNOG00000010084
N
0.703
YTHDF3
Taeniopygia guttata
ENSTGUG00000011243
N
0.703
ENSMEUG00000011285
Macropus eugenii
ENSMEUG00000011285
N
0.703
ENSLAFG00000016052
Loxodonta africana
ENSLAFG00000016052
N
0.703
ENSMGAG00000011168
Meleagris gallopavo
ENSMGAG00000011168
N
0.703
ENSMICG00000009379
Microcebus murinus
ENSMICG00000009379
N
0.703
ENSMODG00000008255
Monodelphis domestica
ENSMODG00000008255
N
0.703
ENSMMUG00000006729
Macaca mulatta
ENSMMUG00000006729
N
0.703
ENSTRUG00000007870
Takifugu rubripes
ENSTRUG00000007870
N
0.703