CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Aqu1.220420
(
Amphimedon queenslandica
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
Aqu1.220420
T62300_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aqu1.220420
YTH
367
457
LLFSVNGSGHFCGVAQMMSEVELSTDTGIWTQDKWKGRFDIRWIYVKDVPNNQLRHIRLENNENKPVTNSRDTQEVPVDKGKLVIKIIHSY
Links
Other
YTH
family RBPs
Other
Amphimedon queenslandica
RBPs
147 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XP_002156821.1
Hydra magnipapillata
XP_002156821.1
N
0.824
XP_002161951.1
Hydra magnipapillata
XP_002161951.1
N
0.824
YTHDF2
Felis catus
ENSFCAG00000012446
N
0.791
YTHDF2
Echinops telfairi
ENSETEG00000017614
N
0.791
YTHDF2
Homo sapiens
ENSG00000198492
N
0.791
YTHDF2
Macropus eugenii
ENSMEUG00000016488
N
0.791
YTHDF2
Gorilla gorilla
ENSGGOG00000024069
N
0.791
YTHDF2
Erinaceus europaeus
ENSEEUG00000011398
N
0.791
YTHDF2
Callithrix jacchus
ENSCJAG00000009804
N
0.791
YTHDF2
Choloepus hoffmanni
ENSCHOG00000000357
N
0.791
YTHDF2
Cavia porcellus
ENSCPOG00000019907
N
0.791
yth2
Danio rerio
ENSDARG00000014498
N
0.791
LOC100070667
Equus caballus
ENSECAG00000023108
N
0.791
Ythdf2
Dipodomys ordii
ENSDORG00000016564
N
0.791
YTHDF2
Microcebus murinus
ENSMICG00000003729
N
0.791
YTHDF2
Macaca mulatta
ENSMMUG00000011391
N
0.791
YTHDF2
Pteropus vampyrus
ENSPVAG00000017224
N
0.791
XR_023164.1
Pan troglodytes
ENSPTRG00000000439
N
0.791
YTHDF2
Sorex araneus
ENSSARG00000001187
N
0.791
YTHDF2
Tarsius syrichta
ENSTSYG00000004178
N
0.791
YTHDF2
Tursiops truncatus
ENSTTRG00000013603
N
0.791
YTHDF2
Procavia capensis
ENSPCAG00000007587
N
0.791
YTHDF2
Ochotona princeps
ENSOPRG00000017111
N
0.791
YTHDF2
Monodelphis domestica
ENSMODG00000010973
N
0.791
YTHDF2
Canis familiaris
ENSCAFG00000011700
N
0.791
Ythdf2
Mus musculus
ENSMUSG00000040025
N
0.791
YTHDF2
Oryctolagus cuniculus
ENSOCUG00000010612
N
0.791
YTHDF2
Otolemur garnettii
ENSOGAG00000014648
N
0.791
YTHDF2
Myotis lucifugus
ENSMLUG00000012606
N
0.791
YTHDF2
Loxodonta africana
ENSLAFG00000030451
N
0.791
Ame_R001131
Ailuropoda melanoleuca
Ame_R001131
N
0.791
YTHD2_BOVIN
Bos taurus
ENSBTAG00000015771
N
0.791
XP_786921.2
Strongylocentrotus purpuratus
XP_786921.2
N
0.780
XP_001187433.1
Strongylocentrotus purpuratus
XP_001187433.1
N
0.780
YTHDF2
Ornithorhynchus anatinus
ENSOANG00000006124
N
0.780
YTHDF2
Gasterosteus aculeatus
ENSGACG00000009603
N
0.780
YTHDF2
Meleagris gallopavo
ENSMGAG00000001610
N
0.780
LOC419583
Gallus gallus
ENSGALG00000000959
N
0.780
YTHDF2
Anolis carolinensis
ENSACAG00000010846
N
0.780
YTHDF2
Oryzias latipes
ENSORLG00000014323
N
0.780
YTHDF2
Takifugu rubripes
ENSTRUG00000011923
N
0.780
YTHDF2
Tetraodon nigroviridis
ENSTNIG00000017263
N
0.780
YTHDF2
Taeniopygia guttata
ENSTGUG00000017347
N
0.780
e_gw.90.29.1
Nematostella vectensis
e_gw.90.29.1
N
0.780
YTHDF1
Tursiops truncatus
ENSTTRG00000001804
N
0.769
YTHDF1
Canis familiaris
ENSCAFG00000012772
N
0.769
YTHDF1
Gorilla gorilla
ENSGGOG00000008340
N
0.769
YTHDF1
Homo sapiens
ENSG00000149658
N
0.769
Ythdf1
Mus musculus
ENSMUSG00000038848
N
0.769
YTHDF1
Erinaceus europaeus
ENSEEUG00000007461
N
0.769
YTHDF1
Macaca mulatta
ENSMMUG00000009227
N
0.769
YTHDF1
Myotis lucifugus
ENSMLUG00000002241
N
0.769
YTHDF1
Otolemur garnettii
ENSOGAG00000000480
N
0.769
Ame_R014316
Ailuropoda melanoleuca
Ame_R014316
N
0.769
YTHDF1
Pan troglodytes
ENSPTRG00000013730
N
0.769
A6MKQ0_CALJA
Callithrix jacchus
ENSCJAG00000010056
N
0.769
Ythdf1
Rattus norvegicus
ENSRNOG00000027015
N
0.769
LOC100060217
Equus caballus
ENSECAG00000019475
N
0.769
ENSPPYG00000011226
Pongo pygmaeus
ENSPPYG00000011226
N
0.769
YTHDF1
Loxodonta africana
ENSLAFG00000008884
N
0.769
YTHDF1
Procavia capensis
ENSPCAG00000002452
N
0.769
ythdf1
Xenopus tropicalis
ENSXETG00000027086
N
0.758
e_gw.462.3.1
Branchiostoma floridae
e_gw.462.3.1
N
0.758
YTHDF1
Taeniopygia guttata
ENSTGUG00000007565
N
0.758
ENSMGAG00000006139
Meleagris gallopavo
ENSMGAG00000006139
N
0.758
YTHDF1
Pteropus vampyrus
ENSPVAG00000017568
N
0.758
ENSOANG00000003723
Ornithorhynchus anatinus
ENSOANG00000003723
N
0.758
AAH68959
Xenopus laevis
AAH68959
N
0.758
AAH60445
Xenopus laevis
AAH60445
N
0.758
ENSMODG00000016842
Monodelphis domestica
ENSMODG00000016842
N
0.758
Q5ZME7_CHICK
Gallus gallus
ENSGALG00000005745
N
0.758
YTHDF1
Cavia porcellus
ENSCPOG00000010202
N
0.758
ENSACAG00000005560
Anolis carolinensis
ENSACAG00000005560
N
0.758
ythdf2
Xenopus tropicalis
ENSXETG00000020636
N
0.747
YTHDF1
Oryctolagus cuniculus
ENSOCUG00000012780
N
0.747
YTHDF1
Ochotona princeps
ENSOPRG00000001758
N
0.747
ENSORLG00000014665
Oryzias latipes
ENSORLG00000014665
N
0.747
AAH78013
Xenopus laevis
AAH78013
N
0.747
Ythdf1
Dipodomys ordii
ENSDORG00000002879
N
0.747
ENSTRUG00000005049
Takifugu rubripes
ENSTRUG00000005049
N
0.736
ENSMEUG00000011285
Macropus eugenii
ENSMEUG00000011285
N
0.736
estExt_fgenesh1_pm.C_4090006
Capitella teleta
estExt_fgenesh1_pm.C_4090006
N
0.736
ENSORLG00000009739
Oryzias latipes
ENSORLG00000009739
N
0.736
Q5ZLM1_CHICK
Gallus gallus
ENSGALG00000015505
N
0.736
ENSTRUG00000004288
Takifugu rubripes
ENSTRUG00000004288
N
0.736
ENSACAG00000016837
Anolis carolinensis
ENSACAG00000016837
N
0.736
ENSTNIG00000003975
Tetraodon nigroviridis
ENSTNIG00000003975
N
0.736
YTHDF3
Taeniopygia guttata
ENSTGUG00000011243
N
0.736
ENSGACG00000002613
Gasterosteus aculeatus
ENSGACG00000002613
N
0.736
DGIL_AUG5s6515g6t1
Acyrtosiphon pisum
DGIL_AUG5s6515g6t1
N
0.736
ENSCSAVG00000010987
Ciona savignyi
ENSCSAVG00000010987
N
0.736
ythdf1
Danio rerio
ENSDARG00000016447
N
0.736
ENSGACG00000012014
Gasterosteus aculeatus
ENSGACG00000012014
N
0.736
LOC776373
Gallus gallus
ENSGALG00000019473
N
0.736
YTHDF1
Bos taurus
ENSBTAG00000010383
N
0.736
ENSMODG00000008255
Monodelphis domestica
ENSMODG00000008255
N
0.736
ENSMGAG00000011168
Meleagris gallopavo
ENSMGAG00000011168
N
0.736
ENSTBEG00000005747
Tupaia belangeri
ENSTBEG00000005747
N
0.725
ENSSARG00000007626
Sorex araneus
ENSSARG00000007626
N
0.725
ENSCPOG00000002961
Cavia porcellus
ENSCPOG00000002961
N
0.725
Ythdf3
Rattus norvegicus
ENSRNOG00000010084
N
0.725
ENSLAFG00000016052
Loxodonta africana
ENSLAFG00000016052
N
0.725
ENSTRUG00000007870
Takifugu rubripes
ENSTRUG00000007870
N
0.725
ENSVPAG00000008104
Vicugna pacos
ENSVPAG00000008104
N
0.725
ythdf3
Xenopus tropicalis
ENSXETG00000021659
N
0.725
ENSCAFG00000007215
Canis familiaris
ENSCAFG00000007215
N
0.725
152141
Helobdella robusta
152141
N
0.725
ENSTTRG00000014564
Tursiops truncatus
ENSTTRG00000014564
N
0.725
ENSCHOG00000010194
Choloepus hoffmanni
ENSCHOG00000010194
N
0.725
ENSPVAG00000002740
Pteropus vampyrus
ENSPVAG00000002740
N
0.725
ENSCING00000004166
Ciona intestinalis
ENSCING00000004166
N
0.725
ENSTSYG00000009117
Tarsius syrichta
ENSTSYG00000009117
N
0.725
YTHDF3
Callithrix jacchus
ENSCJAG00000009217
N
0.725
XR_024462.1
Pan troglodytes
ENSPTRG00000030993
N
0.725
Ythdf3
Mus musculus
ENSMUSG00000047213
N
0.725
ENSG00000185728
Homo sapiens
ENSG00000185728
N
0.725
ENSOANG00000005053
Ornithorhynchus anatinus
ENSOANG00000005053
N
0.725
YTHDF3
Bos taurus
ENSBTAG00000018557
N
0.725
AAH81017
Xenopus laevis
AAH81017
N
0.725
ENSMICG00000009379
Microcebus murinus
ENSMICG00000009379
N
0.725
ENSMMUG00000006729
Macaca mulatta
ENSMMUG00000006729
N
0.725
ENSETEG00000007144
Echinops telfairi
ENSETEG00000007144
N
0.725
ENSOCUG00000008723
Oryctolagus cuniculus
ENSOCUG00000008723
N
0.725
Ame_R018798
Ailuropoda melanoleuca
Ame_R018798
N
0.725
ENSGGOG00000027681
Gorilla gorilla
ENSGGOG00000027681
N
0.725
ENSPPYG00000018626
Pongo pygmaeus
ENSPPYG00000018626
N
0.725
ythdf3
Danio rerio
ENSDARG00000057939
N
0.725
Ythdf3
Dipodomys ordii
ENSDORG00000014699
N
0.725
ENSPCAG00000016282
Procavia capensis
ENSPCAG00000016282
N
0.725
ENSTNIG00000012490
Tetraodon nigroviridis
ENSTNIG00000012490
N
0.714
amel4_ncbi_hmm12284
Tribolium castaneum
amel4_ncbi_hmm12284
N
0.714
CpipJ_CPIJ011115
Culex pipiens
CpipJ_CPIJ011115
N
0.714
PHUM167190
Pediculus humanus
PHUM167190
N
0.714
62837
Helobdella robusta
62837
N
0.714
amel4_ncbi_hmm12284
Apis mellifera
amel4_ncbi_hmm12284
N
0.714
ENSTNIG00000012698
Tetraodon nigroviridis
ENSTNIG00000012698
N
0.714
ENSGACG00000002998
Gasterosteus aculeatus
ENSGACG00000002998
N
0.714
nasonia_NCBI_hmm250744
Nasonia vitripennis
nasonia_NCBI_hmm250744
N
0.714
CPIJ011116
Culex quinquefasciatus
CPIJ011116
N
0.714
AGAP003817
Anopheles gambiae
AGAP003817
N
0.714
CPIJ011115
Culex quinquefasciatus
CPIJ011115
N
0.714
CpipJ_CPIJ011116
Culex pipiens
CpipJ_CPIJ011116
N
0.714
GD18245
Drosophila simulans
FBgn0189779
N
0.703
CG6422
Drosophila melanogaster
FBgn0039261
N
0.703
BGIBMGA007551
Bombyx mori
BGIBMGA007551
N
0.703
AAEL005544
Aedes aegypti
AAEL005544
N
0.703
GM17761
Drosophila sechellia
FBgn0172669
N
0.703