e_gw.462.3.1 (Branchiostoma floridae)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 e_gw.462.3.1 T62358_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.462.3.1 YTH 438 528

Links

Other YTH family RBPs
Other Branchiostoma floridae RBPs

156 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh1_pm.C_4090006 Capitella teleta estExt_fgenesh1_pm.C_4090006 N 0.846
Ythdf3 Dipodomys ordii ENSDORG00000014699 N 0.824
ENSOCUG00000008723 Oryctolagus cuniculus ENSOCUG00000008723 N 0.824
ENSLAFG00000016052 Loxodonta africana ENSLAFG00000016052 N 0.824
ENSGGOG00000027681 Gorilla gorilla ENSGGOG00000027681 N 0.824
ENSCPOG00000002961 Cavia porcellus ENSCPOG00000002961 N 0.824
Ythdf3 Mus musculus ENSMUSG00000047213 N 0.824
ENSPCAG00000016282 Procavia capensis ENSPCAG00000016282 N 0.824
YTHDF3 Bos taurus ENSBTAG00000018557 N 0.824
YTHDF3 Callithrix jacchus ENSCJAG00000009217 N 0.824
ENSMMUG00000006729 Macaca mulatta ENSMMUG00000006729 N 0.824
ENSMICG00000009379 Microcebus murinus ENSMICG00000009379 N 0.824
ENSCHOG00000010194 Choloepus hoffmanni ENSCHOG00000010194 N 0.824
XR_024462.1 Pan troglodytes ENSPTRG00000030993 N 0.824
ENSCAFG00000007215 Canis familiaris ENSCAFG00000007215 N 0.824
ythdf3 Danio rerio ENSDARG00000057939 N 0.824
ENSPPYG00000018626 Pongo pygmaeus ENSPPYG00000018626 N 0.824
Ame_R018798 Ailuropoda melanoleuca Ame_R018798 N 0.824
ENSG00000185728 Homo sapiens ENSG00000185728 N 0.824
ENSPVAG00000002740 Pteropus vampyrus ENSPVAG00000002740 N 0.824
ENSTRUG00000007870 Takifugu rubripes ENSTRUG00000007870 N 0.824
ENSTSYG00000009117 Tarsius syrichta ENSTSYG00000009117 N 0.824
ENSTBEG00000005747 Tupaia belangeri ENSTBEG00000005747 N 0.824
ENSTTRG00000014564 Tursiops truncatus ENSTTRG00000014564 N 0.824
ENSVPAG00000008104 Vicugna pacos ENSVPAG00000008104 N 0.824
ENSETEG00000007144 Echinops telfairi ENSETEG00000007144 N 0.824
Ythdf3 Rattus norvegicus ENSRNOG00000010084 N 0.824
ENSSARG00000007626 Sorex araneus ENSSARG00000007626 N 0.824
YTHDF2 Microcebus murinus ENSMICG00000003729 N 0.813
YTHDF2 Myotis lucifugus ENSMLUG00000012606 N 0.813
YTHDF2 Meleagris gallopavo ENSMGAG00000001610 N 0.813
LOC419583 Gallus gallus ENSGALG00000000959 N 0.813
LOC776373 Gallus gallus ENSGALG00000019473 N 0.813
YTHDF2 Gorilla gorilla ENSGGOG00000024069 N 0.813
YTHDF2 Loxodonta africana ENSLAFG00000030451 N 0.813
ENSMEUG00000011285 Macropus eugenii ENSMEUG00000011285 N 0.813
ENSGACG00000002998 Gasterosteus aculeatus ENSGACG00000002998 N 0.813
Q5ZLM1_CHICK Gallus gallus ENSGALG00000015505 N 0.813
YTHDF2 Macropus eugenii ENSMEUG00000016488 N 0.813
Ythdf2 Mus musculus ENSMUSG00000040025 N 0.813
YTHDF2 Pteropus vampyrus ENSPVAG00000017224 N 0.813
XR_023164.1 Pan troglodytes ENSPTRG00000000439 N 0.813
ENSPPYG00000011226 Pongo pygmaeus ENSPPYG00000011226 N 0.813
YTHDF2 Sorex araneus ENSSARG00000001187 N 0.813
YTHDF3 Taeniopygia guttata ENSTGUG00000011243 N 0.813
YTHDF2 Tursiops truncatus ENSTTRG00000013603 N 0.813
YTHDF2 Tarsius syrichta ENSTSYG00000004178 N 0.813
ENSTNIG00000012698 Tetraodon nigroviridis ENSTNIG00000012698 N 0.813
YTHDF2 Procavia capensis ENSPCAG00000007587 N 0.813
YTHDF2 Ochotona princeps ENSOPRG00000017111 N 0.813
YTHDF2 Monodelphis domestica ENSMODG00000010973 N 0.813
ENSMODG00000008255 Monodelphis domestica ENSMODG00000008255 N 0.813
YTHDF2 Macaca mulatta ENSMMUG00000011391 N 0.813
ENSMODG00000016842 Monodelphis domestica ENSMODG00000016842 N 0.813
YTHDF2 Homo sapiens ENSG00000198492 N 0.813
YTHDF2 Otolemur garnettii ENSOGAG00000014648 N 0.813
YTHDF2 Oryctolagus cuniculus ENSOCUG00000010612 N 0.813
YTHDF1 Macaca mulatta ENSMMUG00000009227 N 0.813
ENSMGAG00000011168 Meleagris gallopavo ENSMGAG00000011168 N 0.813
ENSACAG00000016837 Anolis carolinensis ENSACAG00000016837 N 0.813
YTHDF2 Anolis carolinensis ENSACAG00000010846 N 0.813
YTHDF2 Canis familiaris ENSCAFG00000011700 N 0.813
Ame_R001131 Ailuropoda melanoleuca Ame_R001131 N 0.813
YTHDF2 Cavia porcellus ENSCPOG00000019907 N 0.813
A6MKQ0_CALJA Callithrix jacchus ENSCJAG00000010056 N 0.813
YTHDF2 Choloepus hoffmanni ENSCHOG00000000357 N 0.813
YTHD2_BOVIN Bos taurus ENSBTAG00000015771 N 0.813
YTHDF2 Callithrix jacchus ENSCJAG00000009804 N 0.813
LOC100070667 Equus caballus ENSECAG00000023108 N 0.813
Ythdf2 Dipodomys ordii ENSDORG00000016564 N 0.813
YTHDF2 Felis catus ENSFCAG00000012446 N 0.813
YTHDF2 Erinaceus europaeus ENSEEUG00000011398 N 0.813
YTHDF2 Echinops telfairi ENSETEG00000017614 N 0.813
YTHDF1 Pan troglodytes ENSPTRG00000013730 N 0.802
ENSOANG00000003723 Ornithorhynchus anatinus ENSOANG00000003723 N 0.802
AAH81017 Xenopus laevis AAH81017 N 0.802
YTHDF1 Taeniopygia guttata ENSTGUG00000007565 N 0.802
Ythdf1 Mus musculus ENSMUSG00000038848 N 0.802
YTHDF2 Taeniopygia guttata ENSTGUG00000017347 N 0.802
ENSOANG00000005053 Ornithorhynchus anatinus ENSOANG00000005053 N 0.802
Ythdf1 Rattus norvegicus ENSRNOG00000027015 N 0.802
ENSACAG00000005560 Anolis carolinensis ENSACAG00000005560 N 0.802
YTHDF1 Procavia capensis ENSPCAG00000002452 N 0.802
YTHDF1 Otolemur garnettii ENSOGAG00000000480 N 0.802
YTHDF1 Tursiops truncatus ENSTTRG00000001804 N 0.802
Ame_R014316 Ailuropoda melanoleuca Ame_R014316 N 0.802
ythdf3 Xenopus tropicalis ENSXETG00000021659 N 0.802
YTHDF2 Ornithorhynchus anatinus ENSOANG00000006124 N 0.802
YTHDF1 Gorilla gorilla ENSGGOG00000008340 N 0.802
YTHDF1 Loxodonta africana ENSLAFG00000008884 N 0.802
Q5ZME7_CHICK Gallus gallus ENSGALG00000005745 N 0.802
Ythdf1 Dipodomys ordii ENSDORG00000002879 N 0.802
YTHDF1 Canis familiaris ENSCAFG00000012772 N 0.802
YTHDF1 Homo sapiens ENSG00000149658 N 0.802
ENSMGAG00000006139 Meleagris gallopavo ENSMGAG00000006139 N 0.802
YTHDF1 Myotis lucifugus ENSMLUG00000002241 N 0.802
YTHDF1 Erinaceus europaeus ENSEEUG00000007461 N 0.802
LOC100060217 Equus caballus ENSECAG00000019475 N 0.802
YTHDF1 Cavia porcellus ENSCPOG00000010202 N 0.791
YTHDF2 Tetraodon nigroviridis ENSTNIG00000017263 N 0.791
YTHDF1 Bos taurus ENSBTAG00000010383 N 0.791
YTHDF2 Oryzias latipes ENSORLG00000014323 N 0.791
ENSORLG00000008640 Oryzias latipes ENSORLG00000008640 N 0.791
YTHDF1 Oryctolagus cuniculus ENSOCUG00000012780 N 0.791
YTHDF1 Pteropus vampyrus ENSPVAG00000017568 N 0.791
yth2 Danio rerio ENSDARG00000014498 N 0.791
YTHDF2 Gasterosteus aculeatus ENSGACG00000009603 N 0.791
YTHDF2 Takifugu rubripes ENSTRUG00000011923 N 0.791
AAH60445 Xenopus laevis AAH60445 N 0.780
ENSTRUG00000005049 Takifugu rubripes ENSTRUG00000005049 N 0.780
ENSTNIG00000003975 Tetraodon nigroviridis ENSTNIG00000003975 N 0.780
ENSGACG00000012014 Gasterosteus aculeatus ENSGACG00000012014 N 0.780
ENSGACG00000002613 Gasterosteus aculeatus ENSGACG00000002613 N 0.780
ENSORLG00000014665 Oryzias latipes ENSORLG00000014665 N 0.780
ENSORLG00000009739 Oryzias latipes ENSORLG00000009739 N 0.780
YTHDF1 Ochotona princeps ENSOPRG00000001758 N 0.780
ythdf1 Danio rerio ENSDARG00000016447 N 0.780
e_gw.90.29.1 Nematostella vectensis e_gw.90.29.1 N 0.780
ythdf1 Xenopus tropicalis ENSXETG00000027086 N 0.780
ENSTRUG00000004288 Takifugu rubripes ENSTRUG00000004288 N 0.780
ENSCING00000004166 Ciona intestinalis ENSCING00000004166 N 0.769
AAH68959 Xenopus laevis AAH68959 N 0.769
152141 Helobdella robusta 152141 N 0.769
BGIBMGA007551 Bombyx mori BGIBMGA007551 N 0.769
ythdf2 Xenopus tropicalis ENSXETG00000020636 N 0.758
CG6422 Drosophila melanogaster FBgn0039261 N 0.758
XP_002156821.1 Hydra magnipapillata XP_002156821.1 N 0.758
XP_002161951.1 Hydra magnipapillata XP_002161951.1 N 0.758
Aqu1.220420 Amphimedon queenslandica Aqu1.220420 N 0.758
GK12904 Drosophila willistoni FBgn0214913 N 0.758
62837 Helobdella robusta 62837 N 0.758
GA19581-RA Drosophila pseudoobscura FBgn0079577 N 0.758
ENSCSAVG00000010987 Ciona savignyi ENSCSAVG00000010987 N 0.758
GM17761 Drosophila sechellia FBgn0172669 N 0.758
GD18245 Drosophila simulans FBgn0189779 N 0.758
AAH78013 Xenopus laevis AAH78013 N 0.758
ENSTNIG00000012490 Tetraodon nigroviridis ENSTNIG00000012490 N 0.758
GL21952 Drosophila persimilis FBgn0159545 N 0.758
PHUM167190 Pediculus humanus PHUM167190 N 0.747
GF18592 Drosophila ananassae FBgn0095610 N 0.747
GE10748 Drosophila yakuba FBgn0228591 N 0.747
GG12295 Drosophila erecta FBgn0104586 N 0.747
AGAP003817 Anopheles gambiae AGAP003817 N 0.747
nasonia_NCBI_hmm250744 Nasonia vitripennis nasonia_NCBI_hmm250744 N 0.747
amel4_ncbi_hmm12284 Tribolium castaneum amel4_ncbi_hmm12284 N 0.747
XP_001187433.1 Strongylocentrotus purpuratus XP_001187433.1 N 0.747
XP_786921.2 Strongylocentrotus purpuratus XP_786921.2 N 0.747
amel4_ncbi_hmm12284 Apis mellifera amel4_ncbi_hmm12284 N 0.747
CPIJ011115 Culex quinquefasciatus CPIJ011115 N 0.736
CPIJ011116 Culex quinquefasciatus CPIJ011116 N 0.736
GJ14120 Drosophila virilis FBgn0201338 N 0.736
GH22368 Drosophila grimshawi FBgn0129826 N 0.736
CpipJ_CPIJ011116 Culex pipiens CpipJ_CPIJ011116 N 0.736
CpipJ_CPIJ011115 Culex pipiens CpipJ_CPIJ011115 N 0.736
AAEL005544 Aedes aegypti AAEL005544 N 0.725
DGIL_AUG5s6515g6t1 Acyrtosiphon pisum DGIL_AUG5s6515g6t1 N 0.714