CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw.462.3.1
(
Branchiostoma floridae
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
e_gw.462.3.1
T62358_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw.462.3.1
YTH
438
528
LFFSVNGSGHFCGVAQMMSEVDYNADTGVWSQEKWKGKLEVKWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPPEKGKQVLKILSNY
Links
Other
YTH
family RBPs
Other
Branchiostoma floridae
RBPs
156 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pm.C_4090006
Capitella teleta
estExt_fgenesh1_pm.C_4090006
N
0.846
Ythdf3
Dipodomys ordii
ENSDORG00000014699
N
0.824
ENSOCUG00000008723
Oryctolagus cuniculus
ENSOCUG00000008723
N
0.824
ENSLAFG00000016052
Loxodonta africana
ENSLAFG00000016052
N
0.824
ENSGGOG00000027681
Gorilla gorilla
ENSGGOG00000027681
N
0.824
ENSCPOG00000002961
Cavia porcellus
ENSCPOG00000002961
N
0.824
Ythdf3
Mus musculus
ENSMUSG00000047213
N
0.824
ENSPCAG00000016282
Procavia capensis
ENSPCAG00000016282
N
0.824
YTHDF3
Bos taurus
ENSBTAG00000018557
N
0.824
YTHDF3
Callithrix jacchus
ENSCJAG00000009217
N
0.824
ENSMMUG00000006729
Macaca mulatta
ENSMMUG00000006729
N
0.824
ENSMICG00000009379
Microcebus murinus
ENSMICG00000009379
N
0.824
ENSCHOG00000010194
Choloepus hoffmanni
ENSCHOG00000010194
N
0.824
XR_024462.1
Pan troglodytes
ENSPTRG00000030993
N
0.824
ENSCAFG00000007215
Canis familiaris
ENSCAFG00000007215
N
0.824
ythdf3
Danio rerio
ENSDARG00000057939
N
0.824
ENSPPYG00000018626
Pongo pygmaeus
ENSPPYG00000018626
N
0.824
Ame_R018798
Ailuropoda melanoleuca
Ame_R018798
N
0.824
ENSG00000185728
Homo sapiens
ENSG00000185728
N
0.824
ENSPVAG00000002740
Pteropus vampyrus
ENSPVAG00000002740
N
0.824
ENSTRUG00000007870
Takifugu rubripes
ENSTRUG00000007870
N
0.824
ENSTSYG00000009117
Tarsius syrichta
ENSTSYG00000009117
N
0.824
ENSTBEG00000005747
Tupaia belangeri
ENSTBEG00000005747
N
0.824
ENSTTRG00000014564
Tursiops truncatus
ENSTTRG00000014564
N
0.824
ENSVPAG00000008104
Vicugna pacos
ENSVPAG00000008104
N
0.824
ENSETEG00000007144
Echinops telfairi
ENSETEG00000007144
N
0.824
Ythdf3
Rattus norvegicus
ENSRNOG00000010084
N
0.824
ENSSARG00000007626
Sorex araneus
ENSSARG00000007626
N
0.824
YTHDF2
Microcebus murinus
ENSMICG00000003729
N
0.813
YTHDF2
Myotis lucifugus
ENSMLUG00000012606
N
0.813
YTHDF2
Meleagris gallopavo
ENSMGAG00000001610
N
0.813
LOC419583
Gallus gallus
ENSGALG00000000959
N
0.813
LOC776373
Gallus gallus
ENSGALG00000019473
N
0.813
YTHDF2
Gorilla gorilla
ENSGGOG00000024069
N
0.813
YTHDF2
Loxodonta africana
ENSLAFG00000030451
N
0.813
ENSMEUG00000011285
Macropus eugenii
ENSMEUG00000011285
N
0.813
ENSGACG00000002998
Gasterosteus aculeatus
ENSGACG00000002998
N
0.813
Q5ZLM1_CHICK
Gallus gallus
ENSGALG00000015505
N
0.813
YTHDF2
Macropus eugenii
ENSMEUG00000016488
N
0.813
Ythdf2
Mus musculus
ENSMUSG00000040025
N
0.813
YTHDF2
Pteropus vampyrus
ENSPVAG00000017224
N
0.813
XR_023164.1
Pan troglodytes
ENSPTRG00000000439
N
0.813
ENSPPYG00000011226
Pongo pygmaeus
ENSPPYG00000011226
N
0.813
YTHDF2
Sorex araneus
ENSSARG00000001187
N
0.813
YTHDF3
Taeniopygia guttata
ENSTGUG00000011243
N
0.813
YTHDF2
Tursiops truncatus
ENSTTRG00000013603
N
0.813
YTHDF2
Tarsius syrichta
ENSTSYG00000004178
N
0.813
ENSTNIG00000012698
Tetraodon nigroviridis
ENSTNIG00000012698
N
0.813
YTHDF2
Procavia capensis
ENSPCAG00000007587
N
0.813
YTHDF2
Ochotona princeps
ENSOPRG00000017111
N
0.813
YTHDF2
Monodelphis domestica
ENSMODG00000010973
N
0.813
ENSMODG00000008255
Monodelphis domestica
ENSMODG00000008255
N
0.813
YTHDF2
Macaca mulatta
ENSMMUG00000011391
N
0.813
ENSMODG00000016842
Monodelphis domestica
ENSMODG00000016842
N
0.813
YTHDF2
Homo sapiens
ENSG00000198492
N
0.813
YTHDF2
Otolemur garnettii
ENSOGAG00000014648
N
0.813
YTHDF2
Oryctolagus cuniculus
ENSOCUG00000010612
N
0.813
YTHDF1
Macaca mulatta
ENSMMUG00000009227
N
0.813
ENSMGAG00000011168
Meleagris gallopavo
ENSMGAG00000011168
N
0.813
ENSACAG00000016837
Anolis carolinensis
ENSACAG00000016837
N
0.813
YTHDF2
Anolis carolinensis
ENSACAG00000010846
N
0.813
YTHDF2
Canis familiaris
ENSCAFG00000011700
N
0.813
Ame_R001131
Ailuropoda melanoleuca
Ame_R001131
N
0.813
YTHDF2
Cavia porcellus
ENSCPOG00000019907
N
0.813
A6MKQ0_CALJA
Callithrix jacchus
ENSCJAG00000010056
N
0.813
YTHDF2
Choloepus hoffmanni
ENSCHOG00000000357
N
0.813
YTHD2_BOVIN
Bos taurus
ENSBTAG00000015771
N
0.813
YTHDF2
Callithrix jacchus
ENSCJAG00000009804
N
0.813
LOC100070667
Equus caballus
ENSECAG00000023108
N
0.813
Ythdf2
Dipodomys ordii
ENSDORG00000016564
N
0.813
YTHDF2
Felis catus
ENSFCAG00000012446
N
0.813
YTHDF2
Erinaceus europaeus
ENSEEUG00000011398
N
0.813
YTHDF2
Echinops telfairi
ENSETEG00000017614
N
0.813
YTHDF1
Pan troglodytes
ENSPTRG00000013730
N
0.802
ENSOANG00000003723
Ornithorhynchus anatinus
ENSOANG00000003723
N
0.802
AAH81017
Xenopus laevis
AAH81017
N
0.802
YTHDF1
Taeniopygia guttata
ENSTGUG00000007565
N
0.802
Ythdf1
Mus musculus
ENSMUSG00000038848
N
0.802
YTHDF2
Taeniopygia guttata
ENSTGUG00000017347
N
0.802
ENSOANG00000005053
Ornithorhynchus anatinus
ENSOANG00000005053
N
0.802
Ythdf1
Rattus norvegicus
ENSRNOG00000027015
N
0.802
ENSACAG00000005560
Anolis carolinensis
ENSACAG00000005560
N
0.802
YTHDF1
Procavia capensis
ENSPCAG00000002452
N
0.802
YTHDF1
Otolemur garnettii
ENSOGAG00000000480
N
0.802
YTHDF1
Tursiops truncatus
ENSTTRG00000001804
N
0.802
Ame_R014316
Ailuropoda melanoleuca
Ame_R014316
N
0.802
ythdf3
Xenopus tropicalis
ENSXETG00000021659
N
0.802
YTHDF2
Ornithorhynchus anatinus
ENSOANG00000006124
N
0.802
YTHDF1
Gorilla gorilla
ENSGGOG00000008340
N
0.802
YTHDF1
Loxodonta africana
ENSLAFG00000008884
N
0.802
Q5ZME7_CHICK
Gallus gallus
ENSGALG00000005745
N
0.802
Ythdf1
Dipodomys ordii
ENSDORG00000002879
N
0.802
YTHDF1
Canis familiaris
ENSCAFG00000012772
N
0.802
YTHDF1
Homo sapiens
ENSG00000149658
N
0.802
ENSMGAG00000006139
Meleagris gallopavo
ENSMGAG00000006139
N
0.802
YTHDF1
Myotis lucifugus
ENSMLUG00000002241
N
0.802
YTHDF1
Erinaceus europaeus
ENSEEUG00000007461
N
0.802
LOC100060217
Equus caballus
ENSECAG00000019475
N
0.802
YTHDF1
Cavia porcellus
ENSCPOG00000010202
N
0.791
YTHDF2
Tetraodon nigroviridis
ENSTNIG00000017263
N
0.791
YTHDF1
Bos taurus
ENSBTAG00000010383
N
0.791
YTHDF2
Oryzias latipes
ENSORLG00000014323
N
0.791
ENSORLG00000008640
Oryzias latipes
ENSORLG00000008640
N
0.791
YTHDF1
Oryctolagus cuniculus
ENSOCUG00000012780
N
0.791
YTHDF1
Pteropus vampyrus
ENSPVAG00000017568
N
0.791
yth2
Danio rerio
ENSDARG00000014498
N
0.791
YTHDF2
Gasterosteus aculeatus
ENSGACG00000009603
N
0.791
YTHDF2
Takifugu rubripes
ENSTRUG00000011923
N
0.791
AAH60445
Xenopus laevis
AAH60445
N
0.780
ENSTRUG00000005049
Takifugu rubripes
ENSTRUG00000005049
N
0.780
ENSTNIG00000003975
Tetraodon nigroviridis
ENSTNIG00000003975
N
0.780
ENSGACG00000012014
Gasterosteus aculeatus
ENSGACG00000012014
N
0.780
ENSGACG00000002613
Gasterosteus aculeatus
ENSGACG00000002613
N
0.780
ENSORLG00000014665
Oryzias latipes
ENSORLG00000014665
N
0.780
ENSORLG00000009739
Oryzias latipes
ENSORLG00000009739
N
0.780
YTHDF1
Ochotona princeps
ENSOPRG00000001758
N
0.780
ythdf1
Danio rerio
ENSDARG00000016447
N
0.780
e_gw.90.29.1
Nematostella vectensis
e_gw.90.29.1
N
0.780
ythdf1
Xenopus tropicalis
ENSXETG00000027086
N
0.780
ENSTRUG00000004288
Takifugu rubripes
ENSTRUG00000004288
N
0.780
ENSCING00000004166
Ciona intestinalis
ENSCING00000004166
N
0.769
AAH68959
Xenopus laevis
AAH68959
N
0.769
152141
Helobdella robusta
152141
N
0.769
BGIBMGA007551
Bombyx mori
BGIBMGA007551
N
0.769
ythdf2
Xenopus tropicalis
ENSXETG00000020636
N
0.758
CG6422
Drosophila melanogaster
FBgn0039261
N
0.758
XP_002156821.1
Hydra magnipapillata
XP_002156821.1
N
0.758
XP_002161951.1
Hydra magnipapillata
XP_002161951.1
N
0.758
Aqu1.220420
Amphimedon queenslandica
Aqu1.220420
N
0.758
GK12904
Drosophila willistoni
FBgn0214913
N
0.758
62837
Helobdella robusta
62837
N
0.758
GA19581-RA
Drosophila pseudoobscura
FBgn0079577
N
0.758
ENSCSAVG00000010987
Ciona savignyi
ENSCSAVG00000010987
N
0.758
GM17761
Drosophila sechellia
FBgn0172669
N
0.758
GD18245
Drosophila simulans
FBgn0189779
N
0.758
AAH78013
Xenopus laevis
AAH78013
N
0.758
ENSTNIG00000012490
Tetraodon nigroviridis
ENSTNIG00000012490
N
0.758
GL21952
Drosophila persimilis
FBgn0159545
N
0.758
PHUM167190
Pediculus humanus
PHUM167190
N
0.747
GF18592
Drosophila ananassae
FBgn0095610
N
0.747
GE10748
Drosophila yakuba
FBgn0228591
N
0.747
GG12295
Drosophila erecta
FBgn0104586
N
0.747
AGAP003817
Anopheles gambiae
AGAP003817
N
0.747
nasonia_NCBI_hmm250744
Nasonia vitripennis
nasonia_NCBI_hmm250744
N
0.747
amel4_ncbi_hmm12284
Tribolium castaneum
amel4_ncbi_hmm12284
N
0.747
XP_001187433.1
Strongylocentrotus purpuratus
XP_001187433.1
N
0.747
XP_786921.2
Strongylocentrotus purpuratus
XP_786921.2
N
0.747
amel4_ncbi_hmm12284
Apis mellifera
amel4_ncbi_hmm12284
N
0.747
CPIJ011115
Culex quinquefasciatus
CPIJ011115
N
0.736
CPIJ011116
Culex quinquefasciatus
CPIJ011116
N
0.736
GJ14120
Drosophila virilis
FBgn0201338
N
0.736
GH22368
Drosophila grimshawi
FBgn0129826
N
0.736
CpipJ_CPIJ011116
Culex pipiens
CpipJ_CPIJ011116
N
0.736
CpipJ_CPIJ011115
Culex pipiens
CpipJ_CPIJ011115
N
0.736
AAEL005544
Aedes aegypti
AAEL005544
N
0.725
DGIL_AUG5s6515g6t1
Acyrtosiphon pisum
DGIL_AUG5s6515g6t1
N
0.714