CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CG6422
(
Drosophila melanogaster
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
FBgn0039261
T62179_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0084169
YTH
430
520
LFFSVNGSGHFCGMAQMMTPVDYNSTSSVWSQDKWRGKFKVKWIYVKDVPNGTLRHIRLENNENKSVTNSRDTQEVPNDKGIEVLQILHSY
FBpp0084170
YTH
429
519
LFFSVNGSGHFCGMAQMMTPVDYNSTSSVWSQDKWRGKFKVKWIYVKDVPNGTLRHIRLENNENKSVTNSRDTQEVPNDKGIEVLQILHSY
FBpp0112193
YTH
424
514
LFFSVNGSGHFCGMAQMMTPVDYNSTSSVWSQDKWRGKFKVKWIYVKDVPNGTLRHIRLENNENKSVTNSRDTQEVPNDKGIEVLQILHSY
Links
Other
YTH
family RBPs
Other
Drosophila melanogaster
RBPs
139 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GM17761
Drosophila sechellia
FBgn0172669
N
0.989
GD18245
Drosophila simulans
FBgn0189779
N
0.989
GE10748
Drosophila yakuba
FBgn0228591
N
0.967
GF18592
Drosophila ananassae
FBgn0095610
N
0.967
GL21952
Drosophila persimilis
FBgn0159545
N
0.956
GG12295
Drosophila erecta
FBgn0104586
N
0.956
GA19581-RA
Drosophila pseudoobscura
FBgn0079577
N
0.945
GK12904
Drosophila willistoni
FBgn0214913
N
0.945
GJ14120
Drosophila virilis
FBgn0201338
N
0.923
GH22368
Drosophila grimshawi
FBgn0129826
N
0.912
AGAP003817
Anopheles gambiae
AGAP003817
N
0.857
CpipJ_CPIJ011115
Culex pipiens
CpipJ_CPIJ011115
N
0.813
CpipJ_CPIJ011116
Culex pipiens
CpipJ_CPIJ011116
N
0.813
CPIJ011115
Culex quinquefasciatus
CPIJ011115
N
0.813
estExt_fgenesh1_pm.C_4090006
Capitella teleta
estExt_fgenesh1_pm.C_4090006
N
0.813
CPIJ011116
Culex quinquefasciatus
CPIJ011116
N
0.813
amel4_ncbi_hmm12284
Apis mellifera
amel4_ncbi_hmm12284
N
0.802
amel4_ncbi_hmm12284
Tribolium castaneum
amel4_ncbi_hmm12284
N
0.802
BGIBMGA007551
Bombyx mori
BGIBMGA007551
N
0.802
AAEL005544
Aedes aegypti
AAEL005544
N
0.791
nasonia_NCBI_hmm250744
Nasonia vitripennis
nasonia_NCBI_hmm250744
N
0.791
PHUM167190
Pediculus humanus
PHUM167190
N
0.769
e_gw.462.3.1
Branchiostoma floridae
e_gw.462.3.1
N
0.758
152141
Helobdella robusta
152141
N
0.736
YTHDF1
Otolemur garnettii
ENSOGAG00000000480
N
0.736
DGIL_AUG5s6515g6t1
Acyrtosiphon pisum
DGIL_AUG5s6515g6t1
N
0.736
yth2
Danio rerio
ENSDARG00000014498
N
0.736
ENSPPYG00000011226
Pongo pygmaeus
ENSPPYG00000011226
N
0.725
A6MKQ0_CALJA
Callithrix jacchus
ENSCJAG00000010056
N
0.725
YTHDF1
Myotis lucifugus
ENSMLUG00000002241
N
0.725
YTHDF2
Tetraodon nigroviridis
ENSTNIG00000017263
N
0.725
YTHDF1
Macaca mulatta
ENSMMUG00000009227
N
0.725
YTHDF1
Cavia porcellus
ENSCPOG00000010202
N
0.725
Ythdf1
Rattus norvegicus
ENSRNOG00000027015
N
0.725
YTHDF2
Takifugu rubripes
ENSTRUG00000011923
N
0.725
LOC100060217
Equus caballus
ENSECAG00000019475
N
0.725
YTHDF1
Erinaceus europaeus
ENSEEUG00000007461
N
0.725
YTHDF1
Loxodonta africana
ENSLAFG00000008884
N
0.725
ENSCSAVG00000010987
Ciona savignyi
ENSCSAVG00000010987
N
0.725
YTHDF1
Canis familiaris
ENSCAFG00000012772
N
0.725
Ythdf1
Mus musculus
ENSMUSG00000038848
N
0.725
YTHDF1
Tursiops truncatus
ENSTTRG00000001804
N
0.725
YTHDF2
Gasterosteus aculeatus
ENSGACG00000009603
N
0.725
YTHDF1
Procavia capensis
ENSPCAG00000002452
N
0.725
YTHDF1
Bos taurus
ENSBTAG00000010383
N
0.725
YTHDF2
Oryzias latipes
ENSORLG00000014323
N
0.725
Ame_R014316
Ailuropoda melanoleuca
Ame_R014316
N
0.725
ENSOANG00000003723
Ornithorhynchus anatinus
ENSOANG00000003723
N
0.714
YTHDF2
Loxodonta africana
ENSLAFG00000030451
N
0.714
YTHDF2
Ochotona princeps
ENSOPRG00000017111
N
0.714
YTHDF2
Gorilla gorilla
ENSGGOG00000024069
N
0.714
YTHDF1
Gorilla gorilla
ENSGGOG00000008340
N
0.714
YTHDF2
Oryctolagus cuniculus
ENSOCUG00000010612
N
0.714
Q5ZME7_CHICK
Gallus gallus
ENSGALG00000005745
N
0.714
YTHDF1
Pteropus vampyrus
ENSPVAG00000017568
N
0.714
YTHDF2
Pteropus vampyrus
ENSPVAG00000017224
N
0.714
YTHDF1
Pan troglodytes
ENSPTRG00000013730
N
0.714
ENSMGAG00000006139
Meleagris gallopavo
ENSMGAG00000006139
N
0.714
ENSMODG00000016842
Monodelphis domestica
ENSMODG00000016842
N
0.714
YTHDF2
Macaca mulatta
ENSMMUG00000011391
N
0.714
YTHDF1
Oryctolagus cuniculus
ENSOCUG00000012780
N
0.714
YTHDF2
Procavia capensis
ENSPCAG00000007587
N
0.714
YTHDF2
Myotis lucifugus
ENSMLUG00000012606
N
0.714
Ythdf2
Mus musculus
ENSMUSG00000040025
N
0.714
XR_023164.1
Pan troglodytes
ENSPTRG00000000439
N
0.714
YTHDF2
Monodelphis domestica
ENSMODG00000010973
N
0.714
YTHDF2
Otolemur garnettii
ENSOGAG00000014648
N
0.714
YTHDF2
Microcebus murinus
ENSMICG00000003729
N
0.714
YTHDF2
Macropus eugenii
ENSMEUG00000016488
N
0.714
YTHDF2
Cavia porcellus
ENSCPOG00000019907
N
0.714
YTHDF2
Choloepus hoffmanni
ENSCHOG00000000357
N
0.714
YTHDF2
Canis familiaris
ENSCAFG00000011700
N
0.714
ENSCING00000004166
Ciona intestinalis
ENSCING00000004166
N
0.714
ENSTNIG00000012698
Tetraodon nigroviridis
ENSTNIG00000012698
N
0.714
YTHDF1
Ochotona princeps
ENSOPRG00000001758
N
0.714
ENSTRUG00000007870
Takifugu rubripes
ENSTRUG00000007870
N
0.714
YTHD2_BOVIN
Bos taurus
ENSBTAG00000015771
N
0.714
Ame_R001131
Ailuropoda melanoleuca
Ame_R001131
N
0.714
e_gw.90.29.1
Nematostella vectensis
e_gw.90.29.1
N
0.714
AAH68959
Xenopus laevis
AAH68959
N
0.714
YTHDF2
Tursiops truncatus
ENSTTRG00000013603
N
0.714
YTHDF2
Tarsius syrichta
ENSTSYG00000004178
N
0.714
YTHDF1
Taeniopygia guttata
ENSTGUG00000007565
N
0.714
YTHDF2
Callithrix jacchus
ENSCJAG00000009804
N
0.714
YTHDF2
Echinops telfairi
ENSETEG00000017614
N
0.714
Ythdf2
Dipodomys ordii
ENSDORG00000016564
N
0.714
LOC100070667
Equus caballus
ENSECAG00000023108
N
0.714
YTHDF1
Homo sapiens
ENSG00000149658
N
0.714
YTHDF2
Homo sapiens
ENSG00000198492
N
0.714
YTHDF2
Sorex araneus
ENSSARG00000001187
N
0.714
YTHDF2
Felis catus
ENSFCAG00000012446
N
0.714
YTHDF2
Erinaceus europaeus
ENSEEUG00000011398
N
0.714
ENSVPAG00000008104
Vicugna pacos
ENSVPAG00000008104
N
0.703
ythdf1
Xenopus tropicalis
ENSXETG00000027086
N
0.703
ythdf2
Xenopus tropicalis
ENSXETG00000020636
N
0.703
ENSTTRG00000014564
Tursiops truncatus
ENSTTRG00000014564
N
0.703
ENSPVAG00000002740
Pteropus vampyrus
ENSPVAG00000002740
N
0.703
Ythdf3
Rattus norvegicus
ENSRNOG00000010084
N
0.703
YTHDF3
Taeniopygia guttata
ENSTGUG00000011243
N
0.703
ENSTBEG00000005747
Tupaia belangeri
ENSTBEG00000005747
N
0.703
ENSSARG00000007626
Sorex araneus
ENSSARG00000007626
N
0.703
ENSPCAG00000016282
Procavia capensis
ENSPCAG00000016282
N
0.703
ENSPPYG00000018626
Pongo pygmaeus
ENSPPYG00000018626
N
0.703
XR_024462.1
Pan troglodytes
ENSPTRG00000030993
N
0.703
ENSTSYG00000009117
Tarsius syrichta
ENSTSYG00000009117
N
0.703
ENSGACG00000002998
Gasterosteus aculeatus
ENSGACG00000002998
N
0.703
ENSCHOG00000010194
Choloepus hoffmanni
ENSCHOG00000010194
N
0.703
ENSCAFG00000007215
Canis familiaris
ENSCAFG00000007215
N
0.703
YTHDF3
Bos taurus
ENSBTAG00000018557
N
0.703
YTHDF3
Callithrix jacchus
ENSCJAG00000009217
N
0.703
ENSCPOG00000002961
Cavia porcellus
ENSCPOG00000002961
N
0.703
Ythdf1
Dipodomys ordii
ENSDORG00000002879
N
0.703
ythdf3
Danio rerio
ENSDARG00000057939
N
0.703
ENSACAG00000016837
Anolis carolinensis
ENSACAG00000016837
N
0.703
YTHDF2
Anolis carolinensis
ENSACAG00000010846
N
0.703
Aqu1.220420
Amphimedon queenslandica
Aqu1.220420
N
0.703
62837
Helobdella robusta
62837
N
0.703
Ame_R018798
Ailuropoda melanoleuca
Ame_R018798
N
0.703
AAH60445
Xenopus laevis
AAH60445
N
0.703
ENSACAG00000005560
Anolis carolinensis
ENSACAG00000005560
N
0.703
AAH78013
Xenopus laevis
AAH78013
N
0.703
Ythdf3
Dipodomys ordii
ENSDORG00000014699
N
0.703
ENSETEG00000007144
Echinops telfairi
ENSETEG00000007144
N
0.703
ENSMICG00000009379
Microcebus murinus
ENSMICG00000009379
N
0.703
ENSMGAG00000011168
Meleagris gallopavo
ENSMGAG00000011168
N
0.703
ENSMMUG00000006729
Macaca mulatta
ENSMMUG00000006729
N
0.703
ENSMODG00000008255
Monodelphis domestica
ENSMODG00000008255
N
0.703
YTHDF2
Ornithorhynchus anatinus
ENSOANG00000006124
N
0.703
Ythdf3
Mus musculus
ENSMUSG00000047213
N
0.703
YTHDF2
Meleagris gallopavo
ENSMGAG00000001610
N
0.703
ENSMEUG00000011285
Macropus eugenii
ENSMEUG00000011285
N
0.703
LOC419583
Gallus gallus
ENSGALG00000000959
N
0.703
ENSG00000185728
Homo sapiens
ENSG00000185728
N
0.703
Q5ZLM1_CHICK
Gallus gallus
ENSGALG00000015505
N
0.703
LOC776373
Gallus gallus
ENSGALG00000019473
N
0.703
ENSLAFG00000016052
Loxodonta africana
ENSLAFG00000016052
N
0.703
ENSGGOG00000027681
Gorilla gorilla
ENSGGOG00000027681
N
0.703
ENSOCUG00000008723
Oryctolagus cuniculus
ENSOCUG00000008723
N
0.703