CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GL21952
(
Drosophila persimilis
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
FBgn0159545
T62189_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0186059
YTH
429
519
LFFSVNGSGHFCGMAQMMTPVDYNSTSSVWSQDKWKGKFKVKWIYVKDVPNGKLRHIRLENNDNKSVTNSRDTQEVPNDKGIEVLQILHCY
Links
Other
YTH
family RBPs
Other
Drosophila persimilis
RBPs
148 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GA19581-RA
Drosophila pseudoobscura
FBgn0079577
N
0.989
GF18592
Drosophila ananassae
FBgn0095610
N
0.967
GK12904
Drosophila willistoni
FBgn0214913
N
0.967
GD18245
Drosophila simulans
FBgn0189779
N
0.956
CG6422
Drosophila melanogaster
FBgn0039261
N
0.956
GG12295
Drosophila erecta
FBgn0104586
N
0.956
GM17761
Drosophila sechellia
FBgn0172669
N
0.956
GE10748
Drosophila yakuba
FBgn0228591
N
0.945
GJ14120
Drosophila virilis
FBgn0201338
N
0.945
GH22368
Drosophila grimshawi
FBgn0129826
N
0.934
AGAP003817
Anopheles gambiae
AGAP003817
N
0.846
estExt_fgenesh1_pm.C_4090006
Capitella teleta
estExt_fgenesh1_pm.C_4090006
N
0.813
BGIBMGA007551
Bombyx mori
BGIBMGA007551
N
0.813
amel4_ncbi_hmm12284
Apis mellifera
amel4_ncbi_hmm12284
N
0.802
CpipJ_CPIJ011115
Culex pipiens
CpipJ_CPIJ011115
N
0.802
amel4_ncbi_hmm12284
Tribolium castaneum
amel4_ncbi_hmm12284
N
0.802
CPIJ011115
Culex quinquefasciatus
CPIJ011115
N
0.802
CPIJ011116
Culex quinquefasciatus
CPIJ011116
N
0.802
CpipJ_CPIJ011116
Culex pipiens
CpipJ_CPIJ011116
N
0.802
AAEL005544
Aedes aegypti
AAEL005544
N
0.780
nasonia_NCBI_hmm250744
Nasonia vitripennis
nasonia_NCBI_hmm250744
N
0.780
PHUM167190
Pediculus humanus
PHUM167190
N
0.769
e_gw.462.3.1
Branchiostoma floridae
e_gw.462.3.1
N
0.758
YTHDF1
Otolemur garnettii
ENSOGAG00000000480
N
0.747
Ythdf1
Mus musculus
ENSMUSG00000038848
N
0.736
ENSOANG00000003723
Ornithorhynchus anatinus
ENSOANG00000003723
N
0.736
YTHDF1
Tursiops truncatus
ENSTTRG00000001804
N
0.736
ENSTRUG00000007870
Takifugu rubripes
ENSTRUG00000007870
N
0.736
A6MKQ0_CALJA
Callithrix jacchus
ENSCJAG00000010056
N
0.736
ENSMGAG00000006139
Meleagris gallopavo
ENSMGAG00000006139
N
0.736
ENSMODG00000016842
Monodelphis domestica
ENSMODG00000016842
N
0.736
Ythdf1
Rattus norvegicus
ENSRNOG00000027015
N
0.736
YTHDF1
Macaca mulatta
ENSMMUG00000009227
N
0.736
YTHDF1
Taeniopygia guttata
ENSTGUG00000007565
N
0.736
YTHDF1
Erinaceus europaeus
ENSEEUG00000007461
N
0.736
YTHDF1
Myotis lucifugus
ENSMLUG00000002241
N
0.736
YTHDF1
Cavia porcellus
ENSCPOG00000010202
N
0.736
ENSPPYG00000011226
Pongo pygmaeus
ENSPPYG00000011226
N
0.736
YTHDF1
Bos taurus
ENSBTAG00000010383
N
0.736
LOC100060217
Equus caballus
ENSECAG00000019475
N
0.736
YTHDF1
Canis familiaris
ENSCAFG00000012772
N
0.736
ENSTNIG00000012698
Tetraodon nigroviridis
ENSTNIG00000012698
N
0.736
YTHDF1
Loxodonta africana
ENSLAFG00000008884
N
0.736
152141
Helobdella robusta
152141
N
0.736
Ame_R014316
Ailuropoda melanoleuca
Ame_R014316
N
0.736
Q5ZME7_CHICK
Gallus gallus
ENSGALG00000005745
N
0.736
YTHDF1
Procavia capensis
ENSPCAG00000002452
N
0.736
YTHDF1
Gorilla gorilla
ENSGGOG00000008340
N
0.725
ENSTBEG00000005747
Tupaia belangeri
ENSTBEG00000005747
N
0.725
ENSGGOG00000027681
Gorilla gorilla
ENSGGOG00000027681
N
0.725
YTHDF3
Taeniopygia guttata
ENSTGUG00000011243
N
0.725
ENSMEUG00000011285
Macropus eugenii
ENSMEUG00000011285
N
0.725
ENSLAFG00000016052
Loxodonta africana
ENSLAFG00000016052
N
0.725
ENSMGAG00000011168
Meleagris gallopavo
ENSMGAG00000011168
N
0.725
YTHDF1
Oryctolagus cuniculus
ENSOCUG00000012780
N
0.725
XR_024462.1
Pan troglodytes
ENSPTRG00000030993
N
0.725
ENSPVAG00000002740
Pteropus vampyrus
ENSPVAG00000002740
N
0.725
YTHDF1
Ochotona princeps
ENSOPRG00000001758
N
0.725
YTHDF1
Pan troglodytes
ENSPTRG00000013730
N
0.725
YTHDF2
Oryzias latipes
ENSORLG00000014323
N
0.725
ENSPCAG00000016282
Procavia capensis
ENSPCAG00000016282
N
0.725
ENSPPYG00000018626
Pongo pygmaeus
ENSPPYG00000018626
N
0.725
LOC776373
Gallus gallus
ENSGALG00000019473
N
0.725
YTHDF1
Pteropus vampyrus
ENSPVAG00000017568
N
0.725
ENSMMUG00000006729
Macaca mulatta
ENSMMUG00000006729
N
0.725
ENSSARG00000007626
Sorex araneus
ENSSARG00000007626
N
0.725
ENSMODG00000008255
Monodelphis domestica
ENSMODG00000008255
N
0.725
Ythdf3
Rattus norvegicus
ENSRNOG00000010084
N
0.725
ENSOCUG00000008723
Oryctolagus cuniculus
ENSOCUG00000008723
N
0.725
Ythdf3
Mus musculus
ENSMUSG00000047213
N
0.725
ENSMICG00000009379
Microcebus murinus
ENSMICG00000009379
N
0.725
ENSTSYG00000009117
Tarsius syrichta
ENSTSYG00000009117
N
0.725
ENSCHOG00000010194
Choloepus hoffmanni
ENSCHOG00000010194
N
0.725
ythdf1
Xenopus tropicalis
ENSXETG00000027086
N
0.725
YTHDF3
Callithrix jacchus
ENSCJAG00000009217
N
0.725
ENSVPAG00000008104
Vicugna pacos
ENSVPAG00000008104
N
0.725
Q5ZLM1_CHICK
Gallus gallus
ENSGALG00000015505
N
0.725
ENSCPOG00000002961
Cavia porcellus
ENSCPOG00000002961
N
0.725
ENSCAFG00000007215
Canis familiaris
ENSCAFG00000007215
N
0.725
YTHDF3
Bos taurus
ENSBTAG00000018557
N
0.725
Ame_R018798
Ailuropoda melanoleuca
Ame_R018798
N
0.725
e_gw.90.29.1
Nematostella vectensis
e_gw.90.29.1
N
0.725
AAH60445
Xenopus laevis
AAH60445
N
0.725
DGIL_AUG5s6515g6t1
Acyrtosiphon pisum
DGIL_AUG5s6515g6t1
N
0.725
ENSACAG00000016837
Anolis carolinensis
ENSACAG00000016837
N
0.725
ENSACAG00000005560
Anolis carolinensis
ENSACAG00000005560
N
0.725
yth2
Danio rerio
ENSDARG00000014498
N
0.725
ENSTTRG00000014564
Tursiops truncatus
ENSTTRG00000014564
N
0.725
ENSG00000185728
Homo sapiens
ENSG00000185728
N
0.725
YTHDF1
Homo sapiens
ENSG00000149658
N
0.725
ENSGACG00000002998
Gasterosteus aculeatus
ENSGACG00000002998
N
0.725
YTHDF2
Gasterosteus aculeatus
ENSGACG00000009603
N
0.725
YTHDF2
Tetraodon nigroviridis
ENSTNIG00000017263
N
0.725
ENSETEG00000007144
Echinops telfairi
ENSETEG00000007144
N
0.725
YTHDF2
Takifugu rubripes
ENSTRUG00000011923
N
0.725
ythdf3
Danio rerio
ENSDARG00000057939
N
0.725
Ythdf3
Dipodomys ordii
ENSDORG00000014699
N
0.725
ythdf2
Xenopus tropicalis
ENSXETG00000020636
N
0.714
AAH78013
Xenopus laevis
AAH78013
N
0.714
ENSOANG00000005053
Ornithorhynchus anatinus
ENSOANG00000005053
N
0.714
Ythdf1
Dipodomys ordii
ENSDORG00000002879
N
0.714
ythdf3
Xenopus tropicalis
ENSXETG00000021659
N
0.714
AAH81017
Xenopus laevis
AAH81017
N
0.714
ENSCSAVG00000010987
Ciona savignyi
ENSCSAVG00000010987
N
0.714
YTHDF2
Sorex araneus
ENSSARG00000001187
N
0.703
XR_023164.1
Pan troglodytes
ENSPTRG00000000439
N
0.703
ENSTRUG00000005049
Takifugu rubripes
ENSTRUG00000005049
N
0.703
YTHDF2
Tarsius syrichta
ENSTSYG00000004178
N
0.703
YTHDF2
Tursiops truncatus
ENSTTRG00000013603
N
0.703
YTHDF2
Pteropus vampyrus
ENSPVAG00000017224
N
0.703
ENSTNIG00000003975
Tetraodon nigroviridis
ENSTNIG00000003975
N
0.703
ENSTRUG00000004288
Takifugu rubripes
ENSTRUG00000004288
N
0.703
YTHDF2
Gorilla gorilla
ENSGGOG00000024069
N
0.703
Ythdf2
Dipodomys ordii
ENSDORG00000016564
N
0.703
ythdf1
Danio rerio
ENSDARG00000016447
N
0.703
YTHDF2
Cavia porcellus
ENSCPOG00000019907
N
0.703
LOC100070667
Equus caballus
ENSECAG00000023108
N
0.703
YTHDF2
Erinaceus europaeus
ENSEEUG00000011398
N
0.703
YTHDF2
Felis catus
ENSFCAG00000012446
N
0.703
YTHDF2
Echinops telfairi
ENSETEG00000017614
N
0.703
YTHDF2
Callithrix jacchus
ENSCJAG00000009804
N
0.703
ENSCING00000004166
Ciona intestinalis
ENSCING00000004166
N
0.703
AAH68959
Xenopus laevis
AAH68959
N
0.703
Ame_R001131
Ailuropoda melanoleuca
Ame_R001131
N
0.703
62837
Helobdella robusta
62837
N
0.703
YTHDF2
Anolis carolinensis
ENSACAG00000010846
N
0.703
YTHD2_BOVIN
Bos taurus
ENSBTAG00000015771
N
0.703
YTHDF2
Choloepus hoffmanni
ENSCHOG00000000357
N
0.703
YTHDF2
Canis familiaris
ENSCAFG00000011700
N
0.703
YTHDF2
Homo sapiens
ENSG00000198492
N
0.703
ENSGACG00000002613
Gasterosteus aculeatus
ENSGACG00000002613
N
0.703
YTHDF2
Otolemur garnettii
ENSOGAG00000014648
N
0.703
YTHDF2
Oryctolagus cuniculus
ENSOCUG00000010612
N
0.703
Ythdf2
Mus musculus
ENSMUSG00000040025
N
0.703
YTHDF2
Ochotona princeps
ENSOPRG00000017111
N
0.703
ENSORLG00000008640
Oryzias latipes
ENSORLG00000008640
N
0.703
ENSORLG00000014665
Oryzias latipes
ENSORLG00000014665
N
0.703
ENSORLG00000009739
Oryzias latipes
ENSORLG00000009739
N
0.703
YTHDF2
Monodelphis domestica
ENSMODG00000010973
N
0.703
YTHDF2
Macaca mulatta
ENSMMUG00000011391
N
0.703
YTHDF2
Loxodonta africana
ENSLAFG00000030451
N
0.703
LOC419583
Gallus gallus
ENSGALG00000000959
N
0.703
ENSGACG00000012014
Gasterosteus aculeatus
ENSGACG00000012014
N
0.703
YTHDF2
Macropus eugenii
ENSMEUG00000016488
N
0.703
YTHDF2
Meleagris gallopavo
ENSMGAG00000001610
N
0.703
YTHDF2
Myotis lucifugus
ENSMLUG00000012606
N
0.703
YTHDF2
Microcebus murinus
ENSMICG00000003729
N
0.703
YTHDF2
Procavia capensis
ENSPCAG00000007587
N
0.703