ENSCJAG00000003136 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSCJAG00000003136 T078009_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSCJAG00000003136
M05634_2.00		 Callithrix jacchus NGURGUKK JPLE
Sasse et al.(2025)
RM_Cal.jac_ENSCJAG00000003136 		0.063

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
0.939
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
0.939
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.703
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.703
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.703
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.703
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.063
(90.88%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000005714 RRM 59 136
ENSCJAP00000005714 RRM 133 198

RNA contacting residues

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

97 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSDNOG00000003267 Dasypus novemcinctus ENSDNOG00000003267 I 0.952
NONO Homo sapiens ENSG00000147140 D 0.944
ENSCJAG00000036744 Callithrix jacchus ENSCJAG00000036744 I 0.939
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.939
NONO Equus caballus ENSECAG00000008502 I 0.939
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.939
NONO Felis catus ENSFCAG00000014807 I 0.939
NONO Gorilla gorilla ENSGGOG00000006194 I 0.939
NONO Loxodonta africana ENSLAFG00000013422 I 0.939
NONO Microcebus murinus ENSMICG00000000232 I 0.939
NONO Myotis lucifugus ENSMLUG00000002489 I 0.939
NONO Macaca mulatta ENSMMUG00000020481 I 0.939
ENSMPUG00000004937 Mustela putorius furo ENSMPUG00000004937 I 0.939
Nono Mus musculus ENSMUSG00000031311 I 0.939
ENSNLEG00000001278 Nomascus leucogenys ENSNLEG00000001278 I 0.939
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.939
NONO Otolemur garnettii ENSOGAG00000004834 I 0.939
ENSPANG00000013979 Papio anubis ENSPANG00000013979 I 0.939
NONO Procavia capensis ENSPCAG00000002541 I 0.939
ENSPPYG00000020451 Pongo abelii ENSPPYG00000020451 I 0.939
NONO Pan troglodytes ENSPTRG00000022010 I 0.939
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.939
Nono Rattus norvegicus ENSRNOG00000003689 I 0.939
NONO Sus scrofa ENSSSCG00000023245 I 0.939
ENSSTOG00000015869 Ictidomys tridecemlineatus ENSSTOG00000015869 I 0.939
NONO Tursiops truncatus ENSTTRG00000009605 I 0.939
NONO Vicugna pacos ENSVPAG00000002272 I 0.939
ENSBTAP00000016122-D1 Bos grunniens ENSBTAP00000016122-D1 I 0.939
ENSP00000276079 Macaca fascicularis ENSP00000276079 I 0.939
Myotis_brandtii_NONO_10007307 Myotis brandtii Myotis_brandtii_NONO_10007307 I 0.939
ENSAMEG00000016057 Ailuropoda melanoleuca ENSAMEG00000016057 I 0.939
NONO Bos taurus ENSBTAG00000012152 I 0.939
ENSCAFG00000003207 Canis familiaris ENSCAFG00000003207 I 0.939
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.939
ENSMEUG00000004294 Macropus eugenii ENSMEUG00000004294 I 0.932
NONO Monodelphis domestica ENSMODG00000004445 I 0.932
ENSOARG00000016966 Ovis aries ENSOARG00000016966 I 0.932
ENSPSIG00000010678 Pelodiscus sinensis ENSPSIG00000010678 I 0.932
NONO Sorex araneus ENSSARG00000007959 I 0.932
ENSSHAG00000010195 Sarcophilus harrisii ENSSHAG00000010195 I 0.932
Cmyd_10013139 Chelonia mydas Cmyd_10013139 I 0.932
Ogr12033 Ophisaurus gracilis Ogr12033 I 0.932
Pvit_05344 Pogona vitticeps Pvit_05344 I 0.932
NONO Anolis carolinensis ENSACAG00000015026 I 0.931
ENSFALG00000011765 Ficedula albicollis ENSFALG00000011765 I 0.925
NONO Gallus gallus ENSGALG00000005507 I 0.925
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.925
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.925
Afo_R007329 Aptenodytes forsteri Afo_R007329 I 0.925
Alligator_sinensis_CCG000628.3 Alligator sinensis Alligator_sinensis_CCG000628.3 I 0.925
Brh_R000687 Buceros rhinoceros Brh_R000687 I 0.925
Tal_R004102 Tyto alba Tal_R004102 I 0.925
ENSAPLG00000002642 Anas platyrhynchos ENSAPLG00000002642 I 0.925
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.918
Gfo_R003471 Geospiza fortis Gfo_R003471 I 0.911
Aan_R015248 Calypte anna Aan_R015248 I 0.878
ENSCAFG00000013766 Canis familiaris ENSCAFG00000013766 I 0.841
nono Xenopus tropicalis XB-GENE-1002494 I 0.812
nono.L Xenopus laevis XB-GENE-1002501 I 0.810
ENSLACG00000000598 Latimeria chalumnae ENSLACG00000000598 I 0.808
ENSCPOG00000026604 Cavia porcellus ENSCPOG00000026604 I 0.735
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.721
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.716
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.713
ENSCAFG00000030809 Canis familiaris ENSCAFG00000030809 I 0.709
nono Danio rerio ENSDARG00000020482 I 0.703
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.703
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.703
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.703
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.703
SFPQ Echinops telfairi ENSETEG00000001095 I 0.703
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.703
SFPQ Homo sapiens ENSG00000116560 D 0.703
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.703
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.703
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.703
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.703
Sfpq Mus musculus ENSMUSG00000028820 I 0.703
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.703
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.703
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.703
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.703
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.703
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.703
SFPQ Procavia capensis ENSPCAG00000006164 I 0.703
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.703
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.703
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.703
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.703
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.703
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.703
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.703
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.703
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.703
SFPQ Bos taurus ENSBTAG00000016328 I 0.703
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.703
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.703