sfpq (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 XB-GENE-5968416 T129625_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
sfpq
M29066_2.00		 Xenopus tropicalis NGURGKKU JPLE
Sasse et al.(2025)
RM_Xen.tro_XB-GENE-5968416 		0.019

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.891
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.891
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.891
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.891
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
0.743
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
0.743
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.019
(87.85%)

RNA Binding Domains

Protein ID Domain From To Sequence
AAI66167 RRM 243 320
AAI66167 RRM 317 385
AAI67693 RRM 135 212
AAI67693 RRM 209 277

RNA contacting residues

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

189 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.905
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.905
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.905
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.898
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.898
Aan_R015520 Calypte anna Aan_R015520 I 0.898
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.898
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.898
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.898
Tal_R009770 Tyto alba Tal_R009770 I 0.898
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.891
SFPQ Bos taurus ENSBTAG00000016328 I 0.891
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.891
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.891
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.891
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.891
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.891
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.891
SFPQ Echinops telfairi ENSETEG00000001095 I 0.891
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.891
SFPQ Homo sapiens ENSG00000116560 D 0.891
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.891
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.891
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.891
Sfpq Mus musculus ENSMUSG00000028820 I 0.891
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.891
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.891
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.891
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.891
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.891
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.891
SFPQ Procavia capensis ENSPCAG00000006164 I 0.891
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.891
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.891
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.891
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.891
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.891
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.891
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.891
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.891
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.891
SFPQ Gallus gallus ENSGALG00000002514 I 0.884
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.884
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.884
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.884
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.884
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.878
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.871
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.871
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.864
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.864
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.859
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.857
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.844
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.842
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.840
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.830
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.826
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.816
ENSGMOG00000011957 Gadus morhua ENSGMOG00000011957 I 0.809
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.804
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.804
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.796
sfpq Oryzias latipes ENSORLG00000007459 I 0.795
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.784
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.778
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.776
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.776
PSPC1 Gallus gallus ENSGALG00000017142 I 0.776
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.776
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.776
Aan_R001274 Calypte anna Aan_R001274 I 0.776
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.776
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.776
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.776
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.776
Tal_R009732 Tyto alba Tal_R009732 I 0.776
nono.L Xenopus laevis XB-GENE-1002501 I 0.776
ENSAPLG00000002642 Anas platyrhynchos ENSAPLG00000002642 I 0.770
ENSFALG00000011765 Ficedula albicollis ENSFALG00000011765 I 0.770
NONO Gallus gallus ENSGALG00000005507 I 0.770
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.770
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.770
Afo_R007329 Aptenodytes forsteri Afo_R007329 I 0.770
Brh_R000687 Buceros rhinoceros Brh_R000687 I 0.770
Tal_R004102 Tyto alba Tal_R004102 I 0.770
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.769
ENSPSIG00000010678 Pelodiscus sinensis ENSPSIG00000010678 I 0.764
Alligator_sinensis_CCG000628.3 Alligator sinensis Alligator_sinensis_CCG000628.3 I 0.764
Cmyd_10013139 Chelonia mydas Cmyd_10013139 I 0.764
nono Xenopus tropicalis XB-GENE-1002494 I 0.764
sfpq Danio rerio ENSDARG00000011564 I 0.762
PSPC1 Bos taurus ENSBTAG00000003934 I 0.762
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.762
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.762
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.762
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.762
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.762
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.762
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.762
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.758
Ogr12033 Ophisaurus gracilis Ogr12033 I 0.757
Pvit_05344 Pogona vitticeps Pvit_05344 I 0.757
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.755
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.755
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.755
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.755
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.755
PSPC1 Felis catus ENSFCAG00000027841 I 0.755
PSPC1 Homo sapiens ENSG00000121390 I 0.755
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.755
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.755
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.755
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.755
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.755
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.755
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.755
Pspc1 Mus musculus ENSMUSG00000021938 I 0.755
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.755
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.755
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.755
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.755
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.755
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.755
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.755
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.755
PSPC1 Sorex araneus ENSSARG00000000888 I 0.755
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.755
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.755
NONO Anolis carolinensis ENSACAG00000015026 I 0.750
ENSMEUG00000004294 Macropus eugenii ENSMEUG00000004294 I 0.750
NONO Monodelphis domestica ENSMODG00000004445 I 0.750
ENSSHAG00000010195 Sarcophilus harrisii ENSSHAG00000010195 I 0.750
pspc1 Danio rerio ENSDARG00000006621 I 0.748
ENSLACG00000000598 Latimeria chalumnae ENSLACG00000000598 I 0.748
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.748
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.748
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.748
ENSAMEG00000016057 Ailuropoda melanoleuca ENSAMEG00000016057 I 0.743
NONO Bos taurus ENSBTAG00000012152 I 0.743
ENSCAFG00000003207 Canis familiaris ENSCAFG00000003207 I 0.743
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.743
ENSCJAG00000036744 Callithrix jacchus ENSCJAG00000036744 I 0.743
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.743
ENSDNOG00000003267 Dasypus novemcinctus ENSDNOG00000003267 I 0.743
NONO Equus caballus ENSECAG00000008502 I 0.743
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.743
NONO Felis catus ENSFCAG00000014807 I 0.743
NONO Homo sapiens ENSG00000147140 D 0.743
NONO Gorilla gorilla ENSGGOG00000006194 I 0.743
NONO Loxodonta africana ENSLAFG00000013422 I 0.743
NONO Microcebus murinus ENSMICG00000000232 I 0.743
NONO Myotis lucifugus ENSMLUG00000002489 I 0.743
NONO Macaca mulatta ENSMMUG00000020481 I 0.743
ENSMPUG00000004937 Mustela putorius furo ENSMPUG00000004937 I 0.743
Nono Mus musculus ENSMUSG00000031311 I 0.743
ENSNLEG00000001278 Nomascus leucogenys ENSNLEG00000001278 I 0.743
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.743
NONO Otolemur garnettii ENSOGAG00000004834 I 0.743
ENSPANG00000013979 Papio anubis ENSPANG00000013979 I 0.743
NONO Procavia capensis ENSPCAG00000002541 I 0.743
ENSPPYG00000020451 Pongo abelii ENSPPYG00000020451 I 0.743
NONO Pan troglodytes ENSPTRG00000022010 I 0.743
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.743
Nono Rattus norvegicus ENSRNOG00000003689 I 0.743
NONO Sus scrofa ENSSSCG00000023245 I 0.743
ENSSTOG00000015869 Ictidomys tridecemlineatus ENSSTOG00000015869 I 0.743
NONO Tursiops truncatus ENSTTRG00000009605 I 0.743
NONO Vicugna pacos ENSVPAG00000002272 I 0.743
Aan_R015248 Calypte anna Aan_R015248 I 0.743
ENSBTAP00000016122-D1 Bos grunniens ENSBTAP00000016122-D1 I 0.743
ENSP00000276079 Macaca fascicularis ENSP00000276079 I 0.743
Myotis_brandtii_NONO_10007307 Myotis brandtii Myotis_brandtii_NONO_10007307 I 0.743
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.741
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.741
ENSOARG00000016966 Ovis aries ENSOARG00000016966 I 0.736
NONO Sorex araneus ENSSARG00000007959 I 0.736
Gfo_R003471 Geospiza fortis Gfo_R003471 I 0.736
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.735
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.723
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.716
ENSPFOG00000003362 Poecilia formosa ENSPFOG00000003362 I 0.716
nono Danio rerio ENSDARG00000020482 I 0.714
nono Gasterosteus aculeatus ENSGACG00000011824 I 0.709
ENSMGAG00000004237 Meleagris gallopavo ENSMGAG00000004237 I 0.707
ENSXMAG00000019883 Xiphophorus maculatus ENSXMAG00000019883 I 0.707
nono Oryzias latipes ENSORLG00000012801 I 0.703
ENSXMAG00000007929 Xiphophorus maculatus ENSXMAG00000007929 I 0.703