nono (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 XB-GENE-1002494 T129486_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
nono
M29004_2.00		 Xenopus tropicalis NGURGUKK JPLE
Sasse et al.(2025)
RM_Xen.tro_XB-GENE-1002494 		0.042

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
0.839
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
0.839
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.723
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.723
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.723
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.723
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.042
(89.68%)

RNA Binding Domains

Protein ID Domain From To Sequence
AAH66129 RRM 66 143
AAH66129 RRM 140 209
CAJ81640 RRM 66 143
CAJ81640 RRM 140 209

RNA contacting residues

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
nono.L Xenopus laevis XB-GENE-1002501 I 0.946
ENSAPLG00000002642 Anas platyrhynchos ENSAPLG00000002642 I 0.866
ENSFALG00000011765 Ficedula albicollis ENSFALG00000011765 I 0.866
NONO Gallus gallus ENSGALG00000005507 I 0.866
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.866
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.866
Afo_R007329 Aptenodytes forsteri Afo_R007329 I 0.866
Alligator_sinensis_CCG000628.3 Alligator sinensis Alligator_sinensis_CCG000628.3 I 0.866
Brh_R000687 Buceros rhinoceros Brh_R000687 I 0.866
Tal_R004102 Tyto alba Tal_R004102 I 0.866
ENSPSIG00000010678 Pelodiscus sinensis ENSPSIG00000010678 I 0.859
Cmyd_10013139 Chelonia mydas Cmyd_10013139 I 0.859
Ogr12033 Ophisaurus gracilis Ogr12033 I 0.852
Pvit_05344 Pogona vitticeps Pvit_05344 I 0.852
ENSDNOG00000003267 Dasypus novemcinctus ENSDNOG00000003267 I 0.846
ENSMEUG00000004294 Macropus eugenii ENSMEUG00000004294 I 0.846
NONO Monodelphis domestica ENSMODG00000004445 I 0.846
ENSSHAG00000010195 Sarcophilus harrisii ENSSHAG00000010195 I 0.846
NONO Anolis carolinensis ENSACAG00000015026 I 0.839
ENSAMEG00000016057 Ailuropoda melanoleuca ENSAMEG00000016057 I 0.839
NONO Bos taurus ENSBTAG00000012152 I 0.839
ENSCAFG00000003207 Canis familiaris ENSCAFG00000003207 I 0.839
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.839
ENSCJAG00000036744 Callithrix jacchus ENSCJAG00000036744 I 0.839
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.839
NONO Equus caballus ENSECAG00000008502 I 0.839
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.839
NONO Felis catus ENSFCAG00000014807 I 0.839
NONO Homo sapiens ENSG00000147140 D 0.839
NONO Gorilla gorilla ENSGGOG00000006194 I 0.839
NONO Loxodonta africana ENSLAFG00000013422 I 0.839
NONO Microcebus murinus ENSMICG00000000232 I 0.839
NONO Myotis lucifugus ENSMLUG00000002489 I 0.839
NONO Macaca mulatta ENSMMUG00000020481 I 0.839
ENSMPUG00000004937 Mustela putorius furo ENSMPUG00000004937 I 0.839
Nono Mus musculus ENSMUSG00000031311 I 0.839
ENSNLEG00000001278 Nomascus leucogenys ENSNLEG00000001278 I 0.839
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.839
NONO Otolemur garnettii ENSOGAG00000004834 I 0.839
ENSPANG00000013979 Papio anubis ENSPANG00000013979 I 0.839
NONO Procavia capensis ENSPCAG00000002541 I 0.839
ENSPPYG00000020451 Pongo abelii ENSPPYG00000020451 I 0.839
NONO Pan troglodytes ENSPTRG00000022010 I 0.839
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.839
Nono Rattus norvegicus ENSRNOG00000003689 I 0.839
NONO Sus scrofa ENSSSCG00000023245 I 0.839
ENSSTOG00000015869 Ictidomys tridecemlineatus ENSSTOG00000015869 I 0.839
NONO Tursiops truncatus ENSTTRG00000009605 I 0.839
NONO Vicugna pacos ENSVPAG00000002272 I 0.839
Aan_R015248 Calypte anna Aan_R015248 I 0.839
ENSBTAP00000016122-D1 Bos grunniens ENSBTAP00000016122-D1 I 0.839
ENSP00000276079 Macaca fascicularis ENSP00000276079 I 0.839
Myotis_brandtii_NONO_10007307 Myotis brandtii Myotis_brandtii_NONO_10007307 I 0.839
ENSOARG00000016966 Ovis aries ENSOARG00000016966 I 0.832
NONO Sorex araneus ENSSARG00000007959 I 0.832
Gfo_R003471 Geospiza fortis Gfo_R003471 I 0.826
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.819
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.812
ENSLACG00000000598 Latimeria chalumnae ENSLACG00000000598 I 0.811
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.777
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.764
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.757
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.757
ENSCAFG00000013766 Canis familiaris ENSCAFG00000013766 I 0.750
nono Danio rerio ENSDARG00000020482 I 0.750
nono Gasterosteus aculeatus ENSGACG00000011824 I 0.750
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.750
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.745
ENSONIG00000020497 Oreochromis niloticus ENSONIG00000020497 I 0.743
nono Oryzias latipes ENSORLG00000012801 I 0.743
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.730
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.730
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.730
ENSPFOG00000016436 Poecilia formosa ENSPFOG00000016436 I 0.730
nono Takifugu rubripes ENSTRUG00000005554 I 0.730
ENSXMAG00000019883 Xiphophorus maculatus ENSXMAG00000019883 I 0.730
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.730
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.725
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.723
SFPQ Bos taurus ENSBTAG00000016328 I 0.723
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.723
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.723
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.723
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.723
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.723
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.723
SFPQ Echinops telfairi ENSETEG00000001095 I 0.723
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.723
SFPQ Homo sapiens ENSG00000116560 D 0.723
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.723
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.723
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.723
Sfpq Mus musculus ENSMUSG00000028820 I 0.723
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.723
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.723
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.723
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.723
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.723
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.723
SFPQ Procavia capensis ENSPCAG00000006164 I 0.723
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.723
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.723
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.723
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.723
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.723
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.723
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.723
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.723
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.723
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.723
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.720
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.716
SFPQ Gallus gallus ENSGALG00000002514 I 0.716
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.716
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.716
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.716
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.716
Aan_R015520 Calypte anna Aan_R015520 I 0.716
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.716
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.716
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.716
Tal_R009770 Tyto alba Tal_R009770 I 0.716
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.709
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.709
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.703
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.703
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.703
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.703
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.703