ENSLOCG00000014739 (Lepisosteus oculatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSLOCG00000014739 T081989_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSLOCG00000014739
M14158_2.00		 Lepisosteus oculatus NGURGUKK JPLE
Sasse et al.(2025)
RM_Lep.ocu_ENSLOCG00000014739 		0.052

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
0.743
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
0.743
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.735
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.735
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.735
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.052
(90.92%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLOCP00000018148 RRM 68 145
ENSLOCP00000018148 RRM 142 209

RNA contacting residues

Links

Other RRM family RBPs
Other Lepisosteus oculatus RBPs

181 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.864
nono Danio rerio ENSDARG00000020482 I 0.856
nono Gasterosteus aculeatus ENSGACG00000011824 I 0.838
ENSONIG00000020497 Oreochromis niloticus ENSONIG00000020497 I 0.836
nono Oryzias latipes ENSORLG00000012801 I 0.831
nono Takifugu rubripes ENSTRUG00000005554 I 0.818
ENSXMAG00000019883 Xiphophorus maculatus ENSXMAG00000019883 I 0.803
ENSPFOG00000016436 Poecilia formosa ENSPFOG00000016436 I 0.791
nono.L Xenopus laevis XB-GENE-1002501 I 0.788
nono Xenopus tropicalis XB-GENE-1002494 I 0.777
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.765
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.762
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.762
NONO Anolis carolinensis ENSACAG00000015026 I 0.762
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.762
ENSLACG00000000598 Latimeria chalumnae ENSLACG00000000598 I 0.760
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.757
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.757
Afo_R007329 Aptenodytes forsteri Afo_R007329 I 0.757
Alligator_sinensis_CCG000628.3 Alligator sinensis Alligator_sinensis_CCG000628.3 I 0.757
Brh_R000687 Buceros rhinoceros Brh_R000687 I 0.757
Ogr12033 Ophisaurus gracilis Ogr12033 I 0.757
Pvit_05344 Pogona vitticeps Pvit_05344 I 0.757
Tal_R004102 Tyto alba Tal_R004102 I 0.757
ENSAPLG00000002642 Anas platyrhynchos ENSAPLG00000002642 I 0.757
ENSFALG00000011765 Ficedula albicollis ENSFALG00000011765 I 0.757
NONO Gallus gallus ENSGALG00000005507 I 0.757
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.755
ENSDNOG00000003267 Dasypus novemcinctus ENSDNOG00000003267 I 0.755
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.755
SFPQ Gallus gallus ENSGALG00000002514 I 0.753
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.753
ENSMEUG00000004294 Macropus eugenii ENSMEUG00000004294 I 0.750
NONO Monodelphis domestica ENSMODG00000004445 I 0.750
ENSPSIG00000010678 Pelodiscus sinensis ENSPSIG00000010678 I 0.750
ENSSHAG00000010195 Sarcophilus harrisii ENSSHAG00000010195 I 0.750
Cmyd_10013139 Chelonia mydas Cmyd_10013139 I 0.750
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.750
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.748
Aan_R015520 Calypte anna Aan_R015520 I 0.748
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.748
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.748
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.748
Tal_R009770 Tyto alba Tal_R009770 I 0.748
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.748
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.748
pspc1 Danio rerio ENSDARG00000006621 I 0.747
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.747
NONO Microcebus murinus ENSMICG00000000232 I 0.743
NONO Myotis lucifugus ENSMLUG00000002489 I 0.743
NONO Macaca mulatta ENSMMUG00000020481 I 0.743
ENSMPUG00000004937 Mustela putorius furo ENSMPUG00000004937 I 0.743
Nono Mus musculus ENSMUSG00000031311 I 0.743
ENSNLEG00000001278 Nomascus leucogenys ENSNLEG00000001278 I 0.743
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.743
NONO Otolemur garnettii ENSOGAG00000004834 I 0.743
ENSPANG00000013979 Papio anubis ENSPANG00000013979 I 0.743
NONO Procavia capensis ENSPCAG00000002541 I 0.743
ENSPPYG00000020451 Pongo abelii ENSPPYG00000020451 I 0.743
NONO Pan troglodytes ENSPTRG00000022010 I 0.743
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.743
Nono Rattus norvegicus ENSRNOG00000003689 I 0.743
NONO Sus scrofa ENSSSCG00000023245 I 0.743
ENSSTOG00000015869 Ictidomys tridecemlineatus ENSSTOG00000015869 I 0.743
NONO Tursiops truncatus ENSTTRG00000009605 I 0.743
NONO Vicugna pacos ENSVPAG00000002272 I 0.743
ENSBTAP00000016122-D1 Bos grunniens ENSBTAP00000016122-D1 I 0.743
ENSP00000276079 Macaca fascicularis ENSP00000276079 I 0.743
Myotis_brandtii_NONO_10007307 Myotis brandtii Myotis_brandtii_NONO_10007307 I 0.743
ENSAMEG00000016057 Ailuropoda melanoleuca ENSAMEG00000016057 I 0.743
NONO Bos taurus ENSBTAG00000012152 I 0.743
ENSCAFG00000003207 Canis familiaris ENSCAFG00000003207 I 0.743
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.743
ENSCJAG00000036744 Callithrix jacchus ENSCJAG00000036744 I 0.743
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.743
NONO Equus caballus ENSECAG00000008502 I 0.743
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.743
NONO Felis catus ENSFCAG00000014807 I 0.743
NONO Homo sapiens ENSG00000147140 D 0.743
NONO Gorilla gorilla ENSGGOG00000006194 I 0.743
NONO Loxodonta africana ENSLAFG00000013422 I 0.743
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.741
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.741
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.741
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.741
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.741
Aan_R001274 Calypte anna Aan_R001274 I 0.741
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.741
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.741
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.741
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.741
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.741
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.741
Tal_R009732 Tyto alba Tal_R009732 I 0.741
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.741
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.741
PSPC1 Gallus gallus ENSGALG00000017142 I 0.741
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.740
ENSOARG00000016966 Ovis aries ENSOARG00000016966 I 0.736
NONO Sorex araneus ENSSARG00000007959 I 0.736
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.735
Sfpq Mus musculus ENSMUSG00000028820 I 0.735
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.735
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.735
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.735
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.735
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.735
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.735
SFPQ Procavia capensis ENSPCAG00000006164 I 0.735
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.735
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.735
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.735
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.735
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.735
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.735
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.735
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.735
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.735
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.735
SFPQ Bos taurus ENSBTAG00000016328 I 0.735
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.735
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.735
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.735
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.735
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.735
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.735
SFPQ Echinops telfairi ENSETEG00000001095 I 0.735
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.735
SFPQ Homo sapiens ENSG00000116560 D 0.735
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.735
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.735
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.733
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.730
Aan_R015248 Calypte anna Aan_R015248 I 0.730
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.728
Gfo_R003471 Geospiza fortis Gfo_R003471 I 0.728
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.726
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.726
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.726
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.726
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.726
Pspc1 Mus musculus ENSMUSG00000021938 I 0.726
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.726
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.726
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.726
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.726
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.726
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.726
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.726
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.726
PSPC1 Sorex araneus ENSSARG00000000888 I 0.726
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.726
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.726
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.726
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.726
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.726
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.726
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.726
PSPC1 Felis catus ENSFCAG00000027841 I 0.726
PSPC1 Homo sapiens ENSG00000121390 I 0.726
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.726
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.726
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.725
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.725
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.721
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.719
ENSORLG00000004232 Oryzias latipes ENSORLG00000004232 I 0.719
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.719
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.719
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.719
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.719
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.719
PSPC1 Bos taurus ENSBTAG00000003934 I 0.719
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.719
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.719
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.714
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.714
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.713
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.703
sfpq Oryzias latipes ENSORLG00000007459 I 0.702
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.701