ENSCPOG00000023605 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSCPOG00000023605 T078447_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSCPOG00000023605
M06689_2.00		 Cavia porcellus NGURGUKK JPLE
Sasse et al.(2025)
RM_Cav.por_ENSCPOG00000023605 		0.053

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
0.979
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
0.979
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.723
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.723
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.723
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.723
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.053
(90.35%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000016965 RRM 59 135
ENSCPOP00000016965 RRM 133 201

RNA contacting residues

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

119 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NONO Equus caballus ENSECAG00000008502 I 0.979
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.979
NONO Felis catus ENSFCAG00000014807 I 0.979
NONO Homo sapiens ENSG00000147140 D 0.979
NONO Gorilla gorilla ENSGGOG00000006194 I 0.979
NONO Loxodonta africana ENSLAFG00000013422 I 0.979
NONO Microcebus murinus ENSMICG00000000232 I 0.979
NONO Myotis lucifugus ENSMLUG00000002489 I 0.979
NONO Macaca mulatta ENSMMUG00000020481 I 0.979
ENSMPUG00000004937 Mustela putorius furo ENSMPUG00000004937 I 0.979
Nono Mus musculus ENSMUSG00000031311 I 0.979
ENSNLEG00000001278 Nomascus leucogenys ENSNLEG00000001278 I 0.979
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.979
NONO Otolemur garnettii ENSOGAG00000004834 I 0.979
ENSPANG00000013979 Papio anubis ENSPANG00000013979 I 0.979
NONO Procavia capensis ENSPCAG00000002541 I 0.979
ENSPPYG00000020451 Pongo abelii ENSPPYG00000020451 I 0.979
NONO Pan troglodytes ENSPTRG00000022010 I 0.979
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.979
Nono Rattus norvegicus ENSRNOG00000003689 I 0.979
NONO Sus scrofa ENSSSCG00000023245 I 0.979
ENSSTOG00000015869 Ictidomys tridecemlineatus ENSSTOG00000015869 I 0.979
NONO Tursiops truncatus ENSTTRG00000009605 I 0.979
NONO Vicugna pacos ENSVPAG00000002272 I 0.979
ENSBTAP00000016122-D1 Bos grunniens ENSBTAP00000016122-D1 I 0.979
ENSP00000276079 Macaca fascicularis ENSP00000276079 I 0.979
Myotis_brandtii_NONO_10007307 Myotis brandtii Myotis_brandtii_NONO_10007307 I 0.979
ENSAMEG00000016057 Ailuropoda melanoleuca ENSAMEG00000016057 I 0.979
NONO Bos taurus ENSBTAG00000012152 I 0.979
ENSCAFG00000003207 Canis familiaris ENSCAFG00000003207 I 0.979
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.979
ENSCJAG00000036744 Callithrix jacchus ENSCJAG00000036744 I 0.979
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.979
ENSMEUG00000004294 Macropus eugenii ENSMEUG00000004294 I 0.973
NONO Monodelphis domestica ENSMODG00000004445 I 0.973
ENSOARG00000016966 Ovis aries ENSOARG00000016966 I 0.973
NONO Sorex araneus ENSSARG00000007959 I 0.973
ENSSHAG00000010195 Sarcophilus harrisii ENSSHAG00000010195 I 0.973
ENSDNOG00000003267 Dasypus novemcinctus ENSDNOG00000003267 I 0.966
ENSPSIG00000010678 Pelodiscus sinensis ENSPSIG00000010678 I 0.959
Cmyd_10013139 Chelonia mydas Cmyd_10013139 I 0.959
Ogr12033 Ophisaurus gracilis Ogr12033 I 0.959
Pvit_05344 Pogona vitticeps Pvit_05344 I 0.959
ENSFALG00000011765 Ficedula albicollis ENSFALG00000011765 I 0.952
NONO Gallus gallus ENSGALG00000005507 I 0.952
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.952
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.952
Afo_R007329 Aptenodytes forsteri Afo_R007329 I 0.952
Alligator_sinensis_CCG000628.3 Alligator sinensis Alligator_sinensis_CCG000628.3 I 0.952
Brh_R000687 Buceros rhinoceros Brh_R000687 I 0.952
Tal_R004102 Tyto alba Tal_R004102 I 0.952
ENSAPLG00000002642 Anas platyrhynchos ENSAPLG00000002642 I 0.952
NONO Anolis carolinensis ENSACAG00000015026 I 0.932
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.918
Gfo_R003471 Geospiza fortis Gfo_R003471 I 0.912
Aan_R015248 Calypte anna Aan_R015248 I 0.892
ENSCAFG00000013766 Canis familiaris ENSCAFG00000013766 I 0.824
nono Xenopus tropicalis XB-GENE-1002494 I 0.819
nono.L Xenopus laevis XB-GENE-1002501 I 0.811
ENSLACG00000000598 Latimeria chalumnae ENSLACG00000000598 I 0.804
ENSCPOG00000026604 Cavia porcellus ENSCPOG00000026604 I 0.752
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.750
ENSCAFG00000030809 Canis familiaris ENSCAFG00000030809 I 0.750
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.740
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.730
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.730
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.723
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.723
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.723
SFPQ Echinops telfairi ENSETEG00000001095 I 0.723
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.723
SFPQ Homo sapiens ENSG00000116560 D 0.723
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.723
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.723
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.723
Sfpq Mus musculus ENSMUSG00000028820 I 0.723
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.723
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.723
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.723
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.723
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.723
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.723
SFPQ Procavia capensis ENSPCAG00000006164 I 0.723
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.723
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.723
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.723
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.723
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.723
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.723
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.723
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.723
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.723
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.723
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.723
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.723
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.723
SFPQ Bos taurus ENSBTAG00000016328 I 0.723
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.723
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.723
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.723
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.716
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.716
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.716
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.716
Aan_R015520 Calypte anna Aan_R015520 I 0.716
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.716
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.716
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.716
Tal_R009770 Tyto alba Tal_R009770 I 0.716
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.716
nono Danio rerio ENSDARG00000020482 I 0.709
SFPQ Gallus gallus ENSGALG00000002514 I 0.709
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.709
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.709
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.703
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.703
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.703
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.703
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.703