Glyma12g01350.1 (Glycine max)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		Glyma12g01350.1 T00961_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma12g01350.1 CCCH ZF 233 254
Glyma12g01350.1 RRM 369 428

Links

Other CCCH ZF,RRM family RBPs
Other Glycine max RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
112541 Helobdella robusta 112541 N 0.000
28644.m000926 Ricinus communis 28644.m000926 N 0.000
AAB50269 Xenopus laevis AAB50269 N 0.000
AAEL013869 Aedes aegypti AAEL013869 N 0.000
AAH41291 Xenopus laevis AAH41291 N 0.000
AAH80037 Xenopus laevis AAH80037 N 0.000
AGAP004414 Anopheles gambiae AGAP004414 N 0.000
AGAP010918 Anopheles gambiae AGAP010918 N 0.000
XM_002887343.1 Arabidopsis lyrata Al_scaffold_0002_1857 N 0.000
amel4_ncbi_hmm3649 Apis mellifera amel4_ncbi_hmm3649 N 0.000
Ame_R018329 Ailuropoda melanoleuca Ame_R018329 N 0.000
Ame_R018612 Ailuropoda melanoleuca Ame_R018612 N 0.000
CSTF64 Arabidopsis thaliana AT1G71800-TAIR-G N 0.000
BGIBMGA006476 Bombyx mori BGIBMGA006476 N 0.000
BGIOSIBCE033690 Oryza indica BGIOSIBCE033690 N 0.000
BRADI4G24180 Brachypodium distachyon BRADI4G24180 N 0.000
CPIJ012662 Culex quinquefasciatus CPIJ012662 N 0.000
CpipJ_CPIJ012662 Culex pipiens CpipJ_CPIJ012662 N 0.000
Cucsa.364140 Cucumis sativus Cucsa.364140 N 0.000
DGIL_AUG5s12011g4t1 Acyrtosiphon pisum DGIL_AUG5s12011g4t1 N 0.000
DGIL_AUG5s2502g11t1 Acyrtosiphon pisum DGIL_AUG5s2502g11t1 N 0.000
ENSACAG00000004388 Anolis carolinensis ENSACAG00000004388 N 0.000
CSTF2_BOVIN Bos taurus ENSBTAG00000003547 N 0.000
CSTF2T Canis familiaris ENSCAFG00000015567 N 0.000
CSTF2 Canis familiaris ENSCAFG00000017551 N 0.000
CSTF2T Choloepus hoffmanni ENSCHOG00000011888 N 0.000
CSTF2 Choloepus hoffmanni ENSCHOG00000012803 N 0.000
ENSCING00000017649 Ciona intestinalis ENSCING00000017649 N 0.000
CSTF2 Callithrix jacchus ENSCJAG00000004422 N 0.000
CSTF2T Callithrix jacchus ENSCJAG00000005033 N 0.000
ENSCPOG00000004195 Cavia porcellus ENSCPOG00000004195 N 0.000
CSTF2 Cavia porcellus ENSCPOG00000015255 N 0.000
ENSCSAVG00000010770 Ciona savignyi ENSCSAVG00000010770 N 0.000
cstf2 Danio rerio ENSDARG00000044009 N 0.000
CSTF2 Equus caballus ENSECAG00000009325 N 0.000
CSTF2 Echinops telfairi ENSETEG00000004931 N 0.000
CSTF2 Felis catus ENSFCAG00000007000 N 0.000
CSTF2T Felis catus ENSFCAG00000013011 N 0.000
CSTF2 Homo sapiens ENSG00000101811 N 0.000
CSTF2T Homo sapiens ENSG00000177613 N 0.000
CSTF2 Gasterosteus aculeatus ENSGACG00000017326 N 0.000
Q5ZLS0_CHICK Gallus gallus ENSGALG00000006760 N 0.000
ENSGGOG00000022117 Gorilla gorilla ENSGGOG00000022117 N 0.000
CSTF2 Gorilla gorilla ENSGGOG00000022267 N 0.000
ENSGGOG00000026139 Gorilla gorilla ENSGGOG00000026139 N 0.000
CSTF2 Loxodonta africana ENSLAFG00000000474 N 0.000
CSTF2T Loxodonta africana ENSLAFG00000002058 N 0.000
ENSMEUG00000007875 Macropus eugenii ENSMEUG00000007875 N 0.000
ENSMEUG00000011186 Macropus eugenii ENSMEUG00000011186 N 0.000
CSTF2 Microcebus murinus ENSMICG00000014121 N 0.000
CSTF2 Myotis lucifugus ENSMLUG00000004598 N 0.000
CSTF2T Myotis lucifugus ENSMLUG00000011187 N 0.000
CSTF2T Macaca mulatta ENSMMUG00000010845 N 0.000
CSTF2 Macaca mulatta ENSMMUG00000013008 N 0.000
ENSMODG00000011785 Monodelphis domestica ENSMODG00000011785 N 0.000
Cstf2 Mus musculus ENSMUSG00000031256 N 0.000
Cstf2t Mus musculus ENSMUSG00000053536 N 0.000
ENSOANG00000004208 Ornithorhynchus anatinus ENSOANG00000004208 N 0.000
CSTF2T Oryctolagus cuniculus ENSOCUG00000004647 N 0.000
CSTF2 Oryctolagus cuniculus ENSOCUG00000010468 N 0.000
CSTF2 Oryzias latipes ENSORLG00000001380 N 0.000
CSTF2T Procavia capensis ENSPCAG00000000046 N 0.000
ENSPPYG00000002441 Pongo pygmaeus ENSPPYG00000002441 N 0.000
ENSPPYG00000020541 Pongo pygmaeus ENSPPYG00000020541 N 0.000
CSTF2T Pan troglodytes ENSPTRG00000002510 N 0.000
CSTF2 Pan troglodytes ENSPTRG00000022090 N 0.000
CSTF2T Pteropus vampyrus ENSPVAG00000006274 N 0.000
D3ZKA4_RAT Rattus norvegicus ENSRNOG00000022436 N 0.000
CSTF2T Sorex araneus ENSSARG00000002013 N 0.000
ENSSSCG00000009884 Sus scrofa ENSSSCG00000009884 N 0.000
ENSSSCG00000010430 Sus scrofa ENSSSCG00000010430 N 0.000
CSTF2 Sus scrofa ENSSSCG00000012486 N 0.000
CSTF2T Spermophilus tridecemlineatus ENSSTOG00000005624 N 0.000
CSTF2 Tupaia belangeri ENSTBEG00000010029 N 0.000
CSTF2 Taeniopygia guttata ENSTGUG00000002253 N 0.000
CSTF2 Tetraodon nigroviridis ENSTNIG00000016860 N 0.000
CSTF2 Takifugu rubripes ENSTRUG00000004323 N 0.000
CSTF2T Tursiops truncatus ENSTTRG00000003341 N 0.000
CSTF2 Tursiops truncatus ENSTTRG00000013556 N 0.000
CSTF2 Vicugna pacos ENSVPAG00000006466 N 0.000
cstf2 Xenopus tropicalis ENSXETG00000009642 N 0.000
estExt_fgenesh1_pm.C_80118 Phytophthora capsici estExt_fgenesh1_pm.C_80118 N 0.000
estExt_Genewise1.C_550102 Capitella teleta estExt_Genewise1.C_550102 N 0.000
e_gw.312.28.1 Nematostella vectensis e_gw.312.28.1 N 0.000
e_gw.65.105.1 Branchiostoma floridae e_gw.65.105.1 N 0.000
e_gw.65.110.1 Branchiostoma floridae e_gw.65.110.1 N 0.000
GA20525-RA Drosophila pseudoobscura FBgn0080519 N 0.000
GF16912 Drosophila ananassae FBgn0093932 N 0.000
GG22991 Drosophila erecta FBgn0115148 N 0.000
GH18352 Drosophila grimshawi FBgn0125820 N 0.000
GI23336 Drosophila mojavensis FBgn0146063 N 0.000
GL24357 Drosophila persimilis FBgn0161947 N 0.000
GM17877 Drosophila sechellia FBgn0172784 N 0.000
GD19237 Drosophila simulans FBgn0190742 N 0.000
GJ10336 Drosophila virilis FBgn0197622 N 0.000
GK14167 Drosophila willistoni FBgn0216173 N 0.000
GE25546 Drosophila yakuba FBgn0242611 N 0.000
fgenesh1_pg.C_scaffold_74000038 Phytophthora ramorum fgenesh1_pg.C_scaffold_74000038 N 0.000
fgeneshTA2_pg.C_scaffold_5000618 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_5000618 N 0.000
Glyma10g36350.1 Glycine max Glyma10g36350.1 N 0.000
Glyma20g31220.1 Glycine max Glyma20g31220.1 N 0.000
GRMZM2G174919 Zea mays GRMZM2G174919 N 0.000
GSTUMT00004863001 Tuber melanosporum GSTUMT00004863001 N 0.000
GSVIVG00013670001 Vitis vinifera GSVIVG00013670001 N 0.000
ISCW015573 Ixodes scapularis ISCW015573 N 0.000
LjSGA_018671.1 Lotus japonicus LjSGA_018671.1 N 0.000
LOC_Os11g07490 Oryza sativa LOC_Os11g07490 N 0.000
MDP0000142436 Malus x domestica MDP0000142436 N 0.000
MDP0000208337 Malus x domestica MDP0000208337 N 0.000
MDP0000283046 Malus x domestica MDP0000283046 N 0.000
mgf002767m Mimulus guttatus mgf002767m N 0.000
mgf012202m Mimulus guttatus mgf012202m N 0.000
nasonia_NCBI_hmm235054 Nasonia vitripennis nasonia_NCBI_hmm235054 N 0.000
PASA_GEN_0100181 Daphnia pulex PASA_GEN_0100181 N 0.000
PHUM441150 Pediculus humanus PHUM441150 N 0.000
PITG_14249 Phytophthora infestans PITG_14249 N 0.000
PK22244.1 Cannabis sativa PK22244.1 N 0.000
ppa004010m Prunus persica ppa004010m N 0.000
RO3G_14170 Rhizopus oryzae RO3G_14170 N 0.000
SB05G004860 Sorghum bicolor Sb05g004860 N 0.000
SNAPOd2T00016915001 Oikopleura dioica SNAPOd2T00016915001 N 0.000
SPRG_10503 Saprolegnia parasitica SPRG_10503 N 0.000
s_451557 Phytophthora sojae s_451557 N 0.000
XP_001181887.1 Strongylocentrotus purpuratus XP_001181887.1 N 0.000
XP_001186020.1 Strongylocentrotus purpuratus XP_001186020.1 N 0.000
XP_002159315.1 Hydra magnipapillata XP_002159315.1 N 0.000