GRMZM2G070239 (Zea mays)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		GRMZM2G070239 T07604_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G070239_P01 RRM 4 63
GRMZM2G070239_P01 CCHC ZF 86 103
GRMZM2G070239_P02 RRM 4 63
GRMZM2G070239_P02 CCHC ZF 86 103
GRMZM2G070239_P03 RRM 55 91
GRMZM2G070239_P03 CCHC ZF 114 131
GRMZM2G070239_P04 RRM 1 36
GRMZM2G070239_P04 CCHC ZF 59 76
GRMZM2G070239_P05 RRM 30 78
GRMZM2G070239_P05 CCHC ZF 101 118

Links

Other CCHC ZF,RRM family RBPs
Other Zea mays RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28610.m000073 Ricinus communis 28610.m000073 N 0.759
29848.m004475 Ricinus communis 29848.m004475 N 0.772
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.747
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.747
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.772
BGIOSIBCE008925 Oryza indica BGIOSIBCE008925 N 0.886
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.936
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.897
BRADI3G48460 Brachypodium distachyon BRADI3G48460 N 0.846
BRADI3G53760 Brachypodium distachyon BRADI3G53760 N 0.923
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.785
cassava37340.valid.m1 Manihot esculenta cassava37340.valid.m1 N 0.709
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.759
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.772
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.759
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.785
e_gw1.12.448.1 Chlorella vulgaris e_gw1.12.448.1 N 0.709
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 0.833
e_gw1.332.33.1 Physcomitrella patens e_gw1.332.33.1 N 0.833
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.772
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.759
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.772
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.759
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.797
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.797
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.747
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.885
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.974
GRMZM2G151923 Zea mays GRMZM2G151923 N 0.910
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.759
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.823
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.747
LjSGA_021019.1 Lotus japonicus LjSGA_021019.1 N 0.722
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.923
LOC_Os02g54770 Oryza sativa LOC_Os02g54770 N 0.936
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.936
MDP0000256723 Malus x domestica MDP0000256723 N 0.722
MDP0000870155 Malus x domestica MDP0000870155 N 0.734
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.797
Medtr3g133170 Medicago truncatula Medtr3g133170 N 0.722
mgf005494m Mimulus guttatus mgf005494m N 0.797
mgf014721m Mimulus guttatus mgf014721m N 0.797
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.759
PK15383.1 Cannabis sativa PK15383.1 N 0.772
PK23390.1 Cannabis sativa PK23390.1 N 0.759
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.759
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.772
B9IPK2_POPTR Populus trichocarpa POPTR_0019s07730 N 0.745
ppa012111m Prunus persica ppa012111m N 0.734
ppa012147m Prunus persica ppa012147m N 0.759
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.885
SB04G035540 Sorghum bicolor Sb04g035540 N 1.000
SB10G005960 Sorghum bicolor Sb10g005960 N 0.923