CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CBG08763
(
Caenorhabditis briggsae
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CBG08763
T09576_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG08763
CCHC ZF
494
511
KKCFNCGGVGHIARQCTS
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis briggsae
RBPs
62 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA00142
Caenorhabditis japonica
CJA00142
N
0.722
CJA00525
Caenorhabditis japonica
CJA00525
N
0.722
CJA02546
Caenorhabditis japonica
CJA02546
N
0.722
CJA02670
Caenorhabditis japonica
CJA02670
N
0.722
CJA02757
Caenorhabditis japonica
CJA02757
N
0.833
CJA03777
Caenorhabditis japonica
CJA03777
N
0.722
CJA04336
Caenorhabditis japonica
CJA04336
N
0.000
CJA05078
Caenorhabditis japonica
CJA05078
N
0.722
CJA05814
Caenorhabditis japonica
CJA05814
N
0.722
CJA05850
Caenorhabditis japonica
CJA05850
N
0.000
CJA07934
Caenorhabditis japonica
CJA07934
N
0.778
CJA10177
Caenorhabditis japonica
CJA10177
N
0.722
CJA10256
Caenorhabditis japonica
CJA10256
N
0.000
CJA11030
Caenorhabditis japonica
CJA11030
N
0.722
CJA12763
Caenorhabditis japonica
CJA12763
N
0.722
CJA13138
Caenorhabditis japonica
CJA13138
N
0.778
CJA13217
Caenorhabditis japonica
CJA13217
N
0.000
CJA13245
Caenorhabditis japonica
CJA13245
N
0.722
CJA13676
Caenorhabditis japonica
CJA13676
N
0.778
CJA15447
Caenorhabditis japonica
CJA15447
N
0.722
CJA15515
Caenorhabditis japonica
CJA15515
N
0.833
CJA17240
Caenorhabditis japonica
CJA17240
N
0.000
CJA17448
Caenorhabditis japonica
CJA17448
N
0.722
CJA18092
Caenorhabditis japonica
CJA18092
N
0.778
CJA18651
Caenorhabditis japonica
CJA18651
N
0.722
CJA19647
Caenorhabditis japonica
CJA19647
N
0.722
CJA21076
Caenorhabditis japonica
CJA21076
N
0.722
CJA21290
Caenorhabditis japonica
CJA21290
N
0.778
CJA21786
Caenorhabditis japonica
CJA21786
N
0.722
CJA22105
Caenorhabditis japonica
CJA22105
N
0.722
CJA23492
Caenorhabditis japonica
CJA23492
N
0.722
CJA23650
Caenorhabditis japonica
CJA23650
N
0.722
CJA23793
Caenorhabditis japonica
CJA23793
N
0.722
CJA23880
Caenorhabditis japonica
CJA23880
N
0.722
CJA24356
Caenorhabditis japonica
CJA24356
N
0.722
CJA24410
Caenorhabditis japonica
CJA24410
N
0.722
CJA25140
Caenorhabditis japonica
CJA25140
N
0.722
CJA26146
Caenorhabditis japonica
CJA26146
N
0.778
CJA26568
Caenorhabditis japonica
CJA26568
N
0.000
CJA26989
Caenorhabditis japonica
CJA26989
N
0.000
CJA27243
Caenorhabditis japonica
CJA27243
N
0.722
CJA27741
Caenorhabditis japonica
CJA27741
N
0.722
CJA28002
Caenorhabditis japonica
CJA28002
N
0.833
CJA28132
Caenorhabditis japonica
CJA28132
N
0.778
CJA29053
Caenorhabditis japonica
CJA29053
N
0.778