KHSRP (Tursiops truncatus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSTTRG00000010390 T19713_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		1.000
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		1.000
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		1.000
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTTRP00000009850 KH 131 193
ENSTTRP00000009850 KH 220 284
ENSTTRP00000009850 KH 309 371
ENSTTRP00000009850 KH 411 476

Links

Other KH family RBPs
Other Tursiops truncatus RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29805.m001527 Ricinus communis 29805.m001527 N 0.000
AC235022_4 Medicago truncatula AC235022_4 N 0.000
RS2Z33 Arabidopsis thaliana AT2G37340-TAIR-G N 0.000
At-RS2Z Arabidopsis thaliana AT3G53500-TAIR-G N 0.000
BGIOSIBCE000441 Oryza indica BGIOSIBCE000441 N 0.000
BGIOSIBCE017351 Oryza indica BGIOSIBCE017351 N 0.000
BRADI2G00370 Brachypodium distachyon BRADI2G00370 N 0.000
BRADI2G34687 Brachypodium distachyon BRADI2G34687 N 0.000
BRADI2G37640 Brachypodium distachyon BRADI2G37640 N 0.000
cassava28871.valid.m1 Manihot esculenta cassava28871.valid.m1 N 0.000
cassava28872.valid.m1 Manihot esculenta cassava28872.valid.m1 N 0.000
cassava441.valid.m1 Manihot esculenta cassava441.valid.m1 N 0.000
chr1.CM0033.20.nd Lotus japonicus chr1.CM0033.20.nd N 0.000
XM_002877876.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001437 N 0.000
Glyma03g33260.1 Glycine max Glyma03g33260.1 N 0.000
Glyma03g33270.1 Glycine max Glyma03g33270.1 N 0.000
Glyma19g35980.1 Glycine max Glyma19g35980.1 N 0.000
Glyma19g35990.1 Glycine max Glyma19g35990.1 N 0.000
GRMZM2G099186 Zea mays GRMZM2G099186 N 0.000
GRMZM2G099317 Zea mays GRMZM2G099317 N 0.000
GRMZM2G175419 Zea mays GRMZM2G175419 N 0.000
GRMZM2G474658 Zea mays GRMZM2G474658 N 0.000
GSVIVG00032633001 Vitis vinifera GSVIVG00032633001 N 0.000
LjT38D03.70.nd Lotus japonicus LjT38D03.70.nd N 0.000
LjT38D03.80.nd Lotus japonicus LjT38D03.80.nd N 0.000
LOC_Os01g06290 Oryza sativa LOC_Os01g06290 N 0.000
LOC_Os03g17710 Oryza sativa LOC_Os03g17710 N 0.000
LOC_Os05g02880 Oryza sativa LOC_Os05g02880 N 0.000
mgf009930m Mimulus guttatus mgf009930m N 0.000
PK26144.1 Cannabis sativa PK26144.1 N 0.000
A9PGS4_POPTR Populus trichocarpa POPTR_0006s23170 N 0.000
B9IIW9_POPTR Populus trichocarpa POPTR_0016s08250 N 0.000
ppa009074m Prunus persica ppa009074m N 0.000
ppa009294m Prunus persica ppa009294m N 0.000
SB03G005500 Sorghum bicolor Sb03g005500 N 0.000
SB09G001910 Sorghum bicolor Sb09g001910 N 0.000