GRMZM2G099317 (Zea mays)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		GRMZM2G099317 T07610_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G099317_P01 CCHC ZF 54 71
GRMZM2G099317_P01 CCHC ZF 76 93
GRMZM2G099317_P02 RRM 13 75
GRMZM2G099317_P02 CCHC ZF 102 119
GRMZM2G099317_P02 CCHC ZF 124 141
GRMZM2G099317_P03 RRM 13 75
GRMZM2G099317_P03 CCHC ZF 102 119
GRMZM2G099317_P03 CCHC ZF 124 141
GRMZM2G099317_P04 CCHC ZF 10 27
GRMZM2G099317_P04 CCHC ZF 32 49
GRMZM2G099317_P05 CCHC ZF 10 27
GRMZM2G099317_P05 CCHC ZF 32 49

Links

Other CCHC ZF,RRM family RBPs
Other Zea mays RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G099186 Zea mays GRMZM2G099186 N 0.972
GRMZM2G474658 Zea mays GRMZM2G474658 N 0.972
SB09G001910 Sorghum bicolor Sb09g001910 N 0.970
LOC_Os03g17710 Oryza sativa LOC_Os03g17710 N 0.919
RS2Z33 Arabidopsis thaliana AT2G37340-TAIR-G N 0.917
Sb09g001920 Sorghum bicolor Sb09g001920 N 0.899
GRMZM2G175419 Zea mays GRMZM2G175419 N 0.899
LOC_Os05g02880 Oryza sativa LOC_Os05g02880 N 0.889
BGIOSIBCE017351 Oryza indica BGIOSIBCE017351 N 0.889
BRADI2G37640 Brachypodium distachyon BRADI2G37640 N 0.869
cassava28872.valid.m1 Manihot esculenta cassava28872.valid.m1 N 0.828
29805.m001527 Ricinus communis 29805.m001527 N 0.828
cassava28871.valid.m1 Manihot esculenta cassava28871.valid.m1 N 0.828
cassava441.valid.m1 Manihot esculenta cassava441.valid.m1 N 0.808
B9IIW9_POPTR Populus trichocarpa POPTR_0016s08250 N 0.808
A9PGS4_POPTR Populus trichocarpa POPTR_0006s23170 N 0.798
GSVIVG00032633001 Vitis vinifera GSVIVG00032633001 N 0.798
XM_002877876.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001437 N 0.798
At-RS2Z Arabidopsis thaliana AT3G53500-TAIR-G N 0.798
LjT38D03.70.nd Lotus japonicus LjT38D03.70.nd N 0.798
chr1.CM0033.20.nd Lotus japonicus chr1.CM0033.20.nd N 0.798
Glyma19g35990.1 Glycine max Glyma19g35990.1 N 0.788
mgf009930m Mimulus guttatus mgf009930m N 0.788
BRADI2G34687 Brachypodium distachyon BRADI2G34687 N 0.788
ppa009074m Prunus persica ppa009074m N 0.788
Glyma03g33260.1 Glycine max Glyma03g33260.1 N 0.778
Glyma19g35980.1 Glycine max Glyma19g35980.1 N 0.778
Glyma03g33270.1 Glycine max Glyma03g33270.1 N 0.778
ppa009294m Prunus persica ppa009294m N 0.768
LOC_Os01g06290 Oryza sativa LOC_Os01g06290 N 0.758
AC235022_4 Medicago truncatula AC235022_4 N 0.758
BRADI2G00370 Brachypodium distachyon BRADI2G00370 N 0.758
BGIOSIBCE000441 Oryza indica BGIOSIBCE000441 N 0.758
LjT38D03.80.nd Lotus japonicus LjT38D03.80.nd N 0.758
PK26144.1 Cannabis sativa PK26144.1 N 0.758
SB03G005500 Sorghum bicolor Sb03g005500 N 0.737
GRMZM2G065284 Zea mays GRMZM2G065284 N 0.722