AC235022_4 (Medicago truncatula)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		AC235022_4 T07621_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AC235022_4.1 RRM 13 75
AC235022_4.1 CCHC ZF 105 122
AC235022_4.1 CCHC ZF 127 144
AC235022_4.2 RRM 13 75
AC235022_4.2 CCHC ZF 105 122
AC235022_4.2 CCHC ZF 127 144

Links

Other CCHC ZF,RRM family RBPs
Other Medicago truncatula RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr1.CM0033.20.nd Lotus japonicus chr1.CM0033.20.nd N 0.960
LjT38D03.70.nd Lotus japonicus LjT38D03.70.nd N 0.960
Glyma03g33270.1 Glycine max Glyma03g33270.1 N 0.919
Glyma19g35990.1 Glycine max Glyma19g35990.1 N 0.899
GSVIVG00032633001 Vitis vinifera GSVIVG00032633001 N 0.889
XM_002877876.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001437 N 0.879
Glyma03g33260.1 Glycine max Glyma03g33260.1 N 0.879
Glyma19g35980.1 Glycine max Glyma19g35980.1 N 0.879
At-RS2Z Arabidopsis thaliana AT3G53500-TAIR-G N 0.879
ppa009074m Prunus persica ppa009074m N 0.879
cassava28871.valid.m1 Manihot esculenta cassava28871.valid.m1 N 0.869
cassava28872.valid.m1 Manihot esculenta cassava28872.valid.m1 N 0.869
ppa009294m Prunus persica ppa009294m N 0.869
29805.m001527 Ricinus communis 29805.m001527 N 0.869
RS2Z33 Arabidopsis thaliana AT2G37340-TAIR-G N 0.869
mgf009930m Mimulus guttatus mgf009930m N 0.859
B9IIW9_POPTR Populus trichocarpa POPTR_0016s08250 N 0.848
A9PGS4_POPTR Populus trichocarpa POPTR_0006s23170 N 0.838
BRADI2G00370 Brachypodium distachyon BRADI2G00370 N 0.838
PK26144.1 Cannabis sativa PK26144.1 N 0.838
cassava441.valid.m1 Manihot esculenta cassava441.valid.m1 N 0.828
LOC_Os05g02880 Oryza sativa LOC_Os05g02880 N 0.828
BRADI2G37640 Brachypodium distachyon BRADI2G37640 N 0.828
BGIOSIBCE017351 Oryza indica BGIOSIBCE017351 N 0.828
LOC_Os03g17710 Oryza sativa LOC_Os03g17710 N 0.828
LjT38D03.80.nd Lotus japonicus LjT38D03.80.nd N 0.828
BGIOSIBCE000441 Oryza indica BGIOSIBCE000441 N 0.818
LOC_Os01g06290 Oryza sativa LOC_Os01g06290 N 0.818
GRMZM2G175419 Zea mays GRMZM2G175419 N 0.808
BRADI2G34687 Brachypodium distachyon BRADI2G34687 N 0.808
Sb09g001920 Sorghum bicolor Sb09g001920 N 0.798
SB03G005500 Sorghum bicolor Sb03g005500 N 0.798
SB09G001910 Sorghum bicolor Sb09g001910 N 0.788
GRMZM2G099186 Zea mays GRMZM2G099186 N 0.788
GRMZM2G474658 Zea mays GRMZM2G474658 N 0.778
GRMZM2G099317 Zea mays GRMZM2G099317 N 0.758