CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PK26144.1
(
Cannabis sativa
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
PK26144.1
T07134_0.6
Cannabis sativa genome (2012-Feb-20)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK26144.1
RRM
16
78
LYVGRLPSRVRGRDLEDLFSRYGRVRDVDMKRDFAFVEFSDPRDADDARYGLNGRDFEGTRLI
PK26144.1
CCHC ZF
105
122
GRCFNCGIDGHWARDCKA
PK26144.1
CCHC ZF
127
144
NKCYRCGERGHIERNCQN
Links
Other
CCHC ZF,RRM
family RBPs
Other
Cannabis sativa
RBPs
37 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GSVIVG00032633001
Vitis vinifera
GSVIVG00032633001
N
0.919
ppa009074m
Prunus persica
ppa009074m
N
0.899
ppa009294m
Prunus persica
ppa009294m
N
0.889
chr1.CM0033.20.nd
Lotus japonicus
chr1.CM0033.20.nd
N
0.869
LjT38D03.70.nd
Lotus japonicus
LjT38D03.70.nd
N
0.869
cassava28872.valid.m1
Manihot esculenta
cassava28872.valid.m1
N
0.859
Glyma03g33270.1
Glycine max
Glyma03g33270.1
N
0.859
cassava28871.valid.m1
Manihot esculenta
cassava28871.valid.m1
N
0.859
XM_002877876.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5001437
N
0.859
At-RS2Z
Arabidopsis thaliana
AT3G53500-TAIR-G
N
0.859
Glyma19g35990.1
Glycine max
Glyma19g35990.1
N
0.848
29805.m001527
Ricinus communis
29805.m001527
N
0.848
RS2Z33
Arabidopsis thaliana
AT2G37340-TAIR-G
N
0.838
BRADI2G00370
Brachypodium distachyon
BRADI2G00370
N
0.838
AC235022_4
Medicago truncatula
AC235022_4
N
0.838
mgf009930m
Mimulus guttatus
mgf009930m
N
0.838
B9IIW9_POPTR
Populus trichocarpa
POPTR_0016s08250
N
0.838
Glyma19g35980.1
Glycine max
Glyma19g35980.1
N
0.828
A9PGS4_POPTR
Populus trichocarpa
POPTR_0006s23170
N
0.828
Glyma03g33260.1
Glycine max
Glyma03g33260.1
N
0.828
BGIOSIBCE000441
Oryza indica
BGIOSIBCE000441
N
0.818
BRADI2G37640
Brachypodium distachyon
BRADI2G37640
N
0.818
LOC_Os01g06290
Oryza sativa
LOC_Os01g06290
N
0.818
cassava441.valid.m1
Manihot esculenta
cassava441.valid.m1
N
0.818
SB03G005500
Sorghum bicolor
Sb03g005500
N
0.818
LOC_Os03g17710
Oryza sativa
LOC_Os03g17710
N
0.808
LOC_Os05g02880
Oryza sativa
LOC_Os05g02880
N
0.798
BGIOSIBCE017351
Oryza indica
BGIOSIBCE017351
N
0.798
LjT38D03.80.nd
Lotus japonicus
LjT38D03.80.nd
N
0.798
GRMZM2G175419
Zea mays
GRMZM2G175419
N
0.788
Sb09g001920
Sorghum bicolor
Sb09g001920
N
0.788
SB09G001910
Sorghum bicolor
Sb09g001910
N
0.788
BRADI2G34687
Brachypodium distachyon
BRADI2G34687
N
0.778
GRMZM2G474658
Zea mays
GRMZM2G474658
N
0.778
GRMZM2G099186
Zea mays
GRMZM2G099186
N
0.778
GRMZM2G099317
Zea mays
GRMZM2G099317
N
0.758
ppa009671m
Prunus persica
ppa009671m
N
0.707