CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
LjT38D03.80.nd
(
Lotus japonicus
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
LjT38D03.80.nd
T07666_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjT38D03.80.nd
RRM
13
75
LYVGHLSSRTRERDLERAFSKYGRVRGVDMKHNFAFVEFSDPRDADDARYNLDGRDVEGSRIV
LjT38D03.80.nd
CCHC ZF
99
116
GRCFNCGLDGHWARDCKA
LjT38D03.80.nd
CCHC ZF
121
138
NKCYRCGDRGHVERNCKN
Links
Other
CCHC ZF,RRM
family RBPs
Other
Lotus japonicus
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma03g33260.1
Glycine max
Glyma03g33260.1
N
0.909
Glyma19g35980.1
Glycine max
Glyma19g35980.1
N
0.909
Glyma03g33270.1
Glycine max
Glyma03g33270.1
N
0.889
Glyma19g35990.1
Glycine max
Glyma19g35990.1
N
0.869
chr1.CM0033.20.nd
Lotus japonicus
chr1.CM0033.20.nd
N
0.848
LjT38D03.70.nd
Lotus japonicus
LjT38D03.70.nd
N
0.848
GSVIVG00032633001
Vitis vinifera
GSVIVG00032633001
N
0.838
cassava441.valid.m1
Manihot esculenta
cassava441.valid.m1
N
0.838
cassava28871.valid.m1
Manihot esculenta
cassava28871.valid.m1
N
0.838
XM_002877876.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5001437
N
0.838
At-RS2Z
Arabidopsis thaliana
AT3G53500-TAIR-G
N
0.838
29805.m001527
Ricinus communis
29805.m001527
N
0.838
cassava28872.valid.m1
Manihot esculenta
cassava28872.valid.m1
N
0.838
ppa009074m
Prunus persica
ppa009074m
N
0.828
AC235022_4
Medicago truncatula
AC235022_4
N
0.828
mgf009930m
Mimulus guttatus
mgf009930m
N
0.828
RS2Z33
Arabidopsis thaliana
AT2G37340-TAIR-G
N
0.818
B9IIW9_POPTR
Populus trichocarpa
POPTR_0016s08250
N
0.818
BRADI2G00370
Brachypodium distachyon
BRADI2G00370
N
0.818
LOC_Os01g06290
Oryza sativa
LOC_Os01g06290
N
0.808
ppa009294m
Prunus persica
ppa009294m
N
0.808
A9PGS4_POPTR
Populus trichocarpa
POPTR_0006s23170
N
0.808
BGIOSIBCE000441
Oryza indica
BGIOSIBCE000441
N
0.808
PK26144.1
Cannabis sativa
PK26144.1
N
0.798
GRMZM2G175419
Zea mays
GRMZM2G175419
N
0.788
SB03G005500
Sorghum bicolor
Sb03g005500
N
0.788
LOC_Os03g17710
Oryza sativa
LOC_Os03g17710
N
0.788
BRADI2G37640
Brachypodium distachyon
BRADI2G37640
N
0.788
LOC_Os05g02880
Oryza sativa
LOC_Os05g02880
N
0.788
BGIOSIBCE017351
Oryza indica
BGIOSIBCE017351
N
0.788
Sb09g001920
Sorghum bicolor
Sb09g001920
N
0.768
GRMZM2G099186
Zea mays
GRMZM2G099186
N
0.768
GRMZM2G099317
Zea mays
GRMZM2G099317
N
0.758
GRMZM2G474658
Zea mays
GRMZM2G474658
N
0.758
SB09G001910
Sorghum bicolor
Sb09g001910
N
0.758
BRADI2G34687
Brachypodium distachyon
BRADI2G34687
N
0.737