BRADI2G00370 (Brachypodium distachyon)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		BRADI2G00370 T07180_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI2G00370.1 RRM 16 78
BRADI2G00370.1 CCHC ZF 113 130
BRADI2G00370.1 CCHC ZF 135 152

Links

Other CCHC ZF,RRM family RBPs
Other Brachypodium distachyon RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os01g06290 Oryza sativa LOC_Os01g06290 N 0.949
BGIOSIBCE000441 Oryza indica BGIOSIBCE000441 N 0.949
SB03G005500 Sorghum bicolor Sb03g005500 N 0.919
GSVIVG00032633001 Vitis vinifera GSVIVG00032633001 N 0.899
ppa009294m Prunus persica ppa009294m N 0.859
chr1.CM0033.20.nd Lotus japonicus chr1.CM0033.20.nd N 0.848
ppa009074m Prunus persica ppa009074m N 0.848
LjT38D03.70.nd Lotus japonicus LjT38D03.70.nd N 0.848
Glyma03g33270.1 Glycine max Glyma03g33270.1 N 0.848
PK26144.1 Cannabis sativa PK26144.1 N 0.838
AC235022_4 Medicago truncatula AC235022_4 N 0.838
Glyma03g33260.1 Glycine max Glyma03g33260.1 N 0.838
Glyma19g35980.1 Glycine max Glyma19g35980.1 N 0.838
LOC_Os03g17710 Oryza sativa LOC_Os03g17710 N 0.828
Glyma19g35990.1 Glycine max Glyma19g35990.1 N 0.828
At-RS2Z Arabidopsis thaliana AT3G53500-TAIR-G N 0.828
XM_002877876.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001437 N 0.828
cassava28871.valid.m1 Manihot esculenta cassava28871.valid.m1 N 0.828
cassava28872.valid.m1 Manihot esculenta cassava28872.valid.m1 N 0.828
LjT38D03.80.nd Lotus japonicus LjT38D03.80.nd N 0.818
mgf009930m Mimulus guttatus mgf009930m N 0.818
29805.m001527 Ricinus communis 29805.m001527 N 0.818
RS2Z33 Arabidopsis thaliana AT2G37340-TAIR-G N 0.808
B9IIW9_POPTR Populus trichocarpa POPTR_0016s08250 N 0.808
BRADI2G37640 Brachypodium distachyon BRADI2G37640 N 0.808
BRADI2G34687 Brachypodium distachyon BRADI2G34687 N 0.808
LOC_Os05g02880 Oryza sativa LOC_Os05g02880 N 0.798
A9PGS4_POPTR Populus trichocarpa POPTR_0006s23170 N 0.798
BGIOSIBCE017351 Oryza indica BGIOSIBCE017351 N 0.798
GRMZM2G099186 Zea mays GRMZM2G099186 N 0.788
SB09G001910 Sorghum bicolor Sb09g001910 N 0.788
cassava441.valid.m1 Manihot esculenta cassava441.valid.m1 N 0.788
GRMZM2G175419 Zea mays GRMZM2G175419 N 0.788
Sb09g001920 Sorghum bicolor Sb09g001920 N 0.778
GRMZM2G474658 Zea mays GRMZM2G474658 N 0.778
GRMZM2G099317 Zea mays GRMZM2G099317 N 0.758