LOC_Os03g17710 (Oryza sativa)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		LOC_Os03g17710 T07395_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os03g17710.1 RRM 13 75
LOC_Os03g17710.1 CCHC ZF 108 125
LOC_Os03g17710.1 CCHC ZF 130 147
LOC_Os03g17710.2 RRM 13 75
LOC_Os03g17710.2 CCHC ZF 103 120
LOC_Os03g17710.2 CCHC ZF 125 142

Links

Other CCHC ZF,RRM family RBPs
Other Oryza sativa RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE017351 Oryza indica BGIOSIBCE017351 N 0.970
LOC_Os05g02880 Oryza sativa LOC_Os05g02880 N 0.970
SB09G001910 Sorghum bicolor Sb09g001910 N 0.949
BRADI2G37640 Brachypodium distachyon BRADI2G37640 N 0.939
GRMZM2G474658 Zea mays GRMZM2G474658 N 0.929
GRMZM2G099317 Zea mays GRMZM2G099317 N 0.919
GRMZM2G175419 Zea mays GRMZM2G175419 N 0.919
Sb09g001920 Sorghum bicolor Sb09g001920 N 0.909
GRMZM2G099186 Zea mays GRMZM2G099186 N 0.899
chr1.CM0033.20.nd Lotus japonicus chr1.CM0033.20.nd N 0.869
LjT38D03.70.nd Lotus japonicus LjT38D03.70.nd N 0.869
GSVIVG00032633001 Vitis vinifera GSVIVG00032633001 N 0.859
At-RS2Z Arabidopsis thaliana AT3G53500-TAIR-G N 0.848
Glyma03g33270.1 Glycine max Glyma03g33270.1 N 0.848
29805.m001527 Ricinus communis 29805.m001527 N 0.848
XM_002877876.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001437 N 0.848
Glyma19g35990.1 Glycine max Glyma19g35990.1 N 0.848
cassava28871.valid.m1 Manihot esculenta cassava28871.valid.m1 N 0.848
cassava28872.valid.m1 Manihot esculenta cassava28872.valid.m1 N 0.848
BRADI2G34687 Brachypodium distachyon BRADI2G34687 N 0.838
ppa009074m Prunus persica ppa009074m N 0.838
Glyma03g33260.1 Glycine max Glyma03g33260.1 N 0.838
Glyma19g35980.1 Glycine max Glyma19g35980.1 N 0.838
mgf009930m Mimulus guttatus mgf009930m N 0.838
AC235022_4 Medicago truncatula AC235022_4 N 0.828
BRADI2G00370 Brachypodium distachyon BRADI2G00370 N 0.828
RS2Z33 Arabidopsis thaliana AT2G37340-TAIR-G N 0.828
LOC_Os01g06290 Oryza sativa LOC_Os01g06290 N 0.818
B9IIW9_POPTR Populus trichocarpa POPTR_0016s08250 N 0.818
BGIOSIBCE000441 Oryza indica BGIOSIBCE000441 N 0.818
cassava441.valid.m1 Manihot esculenta cassava441.valid.m1 N 0.818
ppa009294m Prunus persica ppa009294m N 0.808
A9PGS4_POPTR Populus trichocarpa POPTR_0006s23170 N 0.808
PK26144.1 Cannabis sativa PK26144.1 N 0.808
LjT38D03.80.nd Lotus japonicus LjT38D03.80.nd N 0.788
SB03G005500 Sorghum bicolor Sb03g005500 N 0.778