CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LjT38D03.70.nd
(
Lotus japonicus
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
LjT38D03.70.nd
T07665_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjT38D03.70.nd
RRM
13
75
LYVGRLSSRTRSRDLERVFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYNLDGRDVDGSRLI
LjT38D03.70.nd
CCHC ZF
109
126
GRCFNCGIDGHWARDCKA
LjT38D03.70.nd
CCHC ZF
131
148
NKCYRCGERGHIEKNCKN
Links
Other
CCHC ZF,RRM
family RBPs
Other
Lotus japonicus
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
chr1.CM0033.20.nd
Lotus japonicus
chr1.CM0033.20.nd
N
1.000
AC235022_4
Medicago truncatula
AC235022_4
N
0.960
Glyma03g33270.1
Glycine max
Glyma03g33270.1
N
0.949
Glyma19g35990.1
Glycine max
Glyma19g35990.1
N
0.929
ppa009074m
Prunus persica
ppa009074m
N
0.919
XM_002877876.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5001437
N
0.909
Glyma19g35980.1
Glycine max
Glyma19g35980.1
N
0.909
At-RS2Z
Arabidopsis thaliana
AT3G53500-TAIR-G
N
0.909
Glyma03g33260.1
Glycine max
Glyma03g33260.1
N
0.909
cassava28871.valid.m1
Manihot esculenta
cassava28871.valid.m1
N
0.899
GSVIVG00032633001
Vitis vinifera
GSVIVG00032633001
N
0.899
cassava28872.valid.m1
Manihot esculenta
cassava28872.valid.m1
N
0.899
mgf009930m
Mimulus guttatus
mgf009930m
N
0.899
29805.m001527
Ricinus communis
29805.m001527
N
0.899
ppa009294m
Prunus persica
ppa009294m
N
0.899
RS2Z33
Arabidopsis thaliana
AT2G37340-TAIR-G
N
0.889
B9IIW9_POPTR
Populus trichocarpa
POPTR_0016s08250
N
0.879
LOC_Os03g17710
Oryza sativa
LOC_Os03g17710
N
0.869
BGIOSIBCE017351
Oryza indica
BGIOSIBCE017351
N
0.869
PK26144.1
Cannabis sativa
PK26144.1
N
0.869
LOC_Os05g02880
Oryza sativa
LOC_Os05g02880
N
0.869
BRADI2G37640
Brachypodium distachyon
BRADI2G37640
N
0.869
A9PGS4_POPTR
Populus trichocarpa
POPTR_0006s23170
N
0.869
cassava441.valid.m1
Manihot esculenta
cassava441.valid.m1
N
0.859
GRMZM2G175419
Zea mays
GRMZM2G175419
N
0.848
LjT38D03.80.nd
Lotus japonicus
LjT38D03.80.nd
N
0.848
BRADI2G00370
Brachypodium distachyon
BRADI2G00370
N
0.848
Sb09g001920
Sorghum bicolor
Sb09g001920
N
0.838
BGIOSIBCE000441
Oryza indica
BGIOSIBCE000441
N
0.828
GRMZM2G099186
Zea mays
GRMZM2G099186
N
0.828
LOC_Os01g06290
Oryza sativa
LOC_Os01g06290
N
0.828
SB09G001910
Sorghum bicolor
Sb09g001910
N
0.828
BRADI2G34687
Brachypodium distachyon
BRADI2G34687
N
0.818
GRMZM2G474658
Zea mays
GRMZM2G474658
N
0.818
SB03G005500
Sorghum bicolor
Sb03g005500
N
0.808
GRMZM2G099317
Zea mays
GRMZM2G099317
N
0.798