B9IIW9_POPTR (Populus trichocarpa)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		POPTR_0016s08250 T07419_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s08250.1 RRM 13 75
POPTR_0016s08250.1 CCHC ZF 99 116
POPTR_0016s08250.1 CCHC ZF 121 138

Links

Other CCHC ZF,RRM family RBPs
Other Populus trichocarpa RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A9PGS4_POPTR Populus trichocarpa POPTR_0006s23170 N 0.990
cassava28872.valid.m1 Manihot esculenta cassava28872.valid.m1 N 0.960
cassava28871.valid.m1 Manihot esculenta cassava28871.valid.m1 N 0.960
29805.m001527 Ricinus communis 29805.m001527 N 0.949
cassava441.valid.m1 Manihot esculenta cassava441.valid.m1 N 0.919
RS2Z33 Arabidopsis thaliana AT2G37340-TAIR-G N 0.889
At-RS2Z Arabidopsis thaliana AT3G53500-TAIR-G N 0.889
XM_002877876.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001437 N 0.889
LjT38D03.70.nd Lotus japonicus LjT38D03.70.nd N 0.879
GSVIVG00032633001 Vitis vinifera GSVIVG00032633001 N 0.879
chr1.CM0033.20.nd Lotus japonicus chr1.CM0033.20.nd N 0.879
ppa009294m Prunus persica ppa009294m N 0.869
mgf009930m Mimulus guttatus mgf009930m N 0.869
Glyma03g33260.1 Glycine max Glyma03g33260.1 N 0.859
Glyma19g35980.1 Glycine max Glyma19g35980.1 N 0.859
Glyma03g33270.1 Glycine max Glyma03g33270.1 N 0.848
AC235022_4 Medicago truncatula AC235022_4 N 0.848
ppa009074m Prunus persica ppa009074m N 0.838
Sb09g001920 Sorghum bicolor Sb09g001920 N 0.838
Glyma19g35990.1 Glycine max Glyma19g35990.1 N 0.838
PK26144.1 Cannabis sativa PK26144.1 N 0.838
GRMZM2G099186 Zea mays GRMZM2G099186 N 0.828
GRMZM2G175419 Zea mays GRMZM2G175419 N 0.828
SB09G001910 Sorghum bicolor Sb09g001910 N 0.818
LjT38D03.80.nd Lotus japonicus LjT38D03.80.nd N 0.818
GRMZM2G474658 Zea mays GRMZM2G474658 N 0.818
BRADI2G37640 Brachypodium distachyon BRADI2G37640 N 0.818
LOC_Os03g17710 Oryza sativa LOC_Os03g17710 N 0.818
GRMZM2G099317 Zea mays GRMZM2G099317 N 0.808
BGIOSIBCE017351 Oryza indica BGIOSIBCE017351 N 0.808
BRADI2G00370 Brachypodium distachyon BRADI2G00370 N 0.808
LOC_Os05g02880 Oryza sativa LOC_Os05g02880 N 0.808
BGIOSIBCE000441 Oryza indica BGIOSIBCE000441 N 0.788
LOC_Os01g06290 Oryza sativa LOC_Os01g06290 N 0.788
BRADI2G34687 Brachypodium distachyon BRADI2G34687 N 0.788
SB03G005500 Sorghum bicolor Sb03g005500 N 0.768