CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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cassava28872.valid.m1
(
Manihot esculenta
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
cassava28872.valid.m1
T07506_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava28872.valid.m1
RRM
13
75
LYVGHLASRTRSRDLEYLFSKYGRVRDVDMKRDYAFVEFSDPRDADDARYHLDGKDFDGSRII
cassava28872.valid.m1
CCHC ZF
99
116
GRCFNCGIDGHWARDCKA
cassava28872.valid.m1
CCHC ZF
121
138
NKCYRCGERGHIERNCKN
Links
Other
CCHC ZF,RRM
family RBPs
Other
Manihot esculenta
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava28871.valid.m1
Manihot esculenta
cassava28871.valid.m1
N
1.000
29805.m001527
Ricinus communis
29805.m001527
N
0.990
cassava441.valid.m1
Manihot esculenta
cassava441.valid.m1
N
0.960
B9IIW9_POPTR
Populus trichocarpa
POPTR_0016s08250
N
0.960
A9PGS4_POPTR
Populus trichocarpa
POPTR_0006s23170
N
0.949
At-RS2Z
Arabidopsis thaliana
AT3G53500-TAIR-G
N
0.899
LjT38D03.70.nd
Lotus japonicus
LjT38D03.70.nd
N
0.899
GSVIVG00032633001
Vitis vinifera
GSVIVG00032633001
N
0.899
XM_002877876.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5001437
N
0.899
chr1.CM0033.20.nd
Lotus japonicus
chr1.CM0033.20.nd
N
0.899
ppa009294m
Prunus persica
ppa009294m
N
0.889
RS2Z33
Arabidopsis thaliana
AT2G37340-TAIR-G
N
0.879
Glyma19g35980.1
Glycine max
Glyma19g35980.1
N
0.879
mgf009930m
Mimulus guttatus
mgf009930m
N
0.879
Glyma03g33260.1
Glycine max
Glyma03g33260.1
N
0.879
AC235022_4
Medicago truncatula
AC235022_4
N
0.869
Glyma03g33270.1
Glycine max
Glyma03g33270.1
N
0.869
Glyma19g35990.1
Glycine max
Glyma19g35990.1
N
0.859
Sb09g001920
Sorghum bicolor
Sb09g001920
N
0.859
ppa009074m
Prunus persica
ppa009074m
N
0.859
PK26144.1
Cannabis sativa
PK26144.1
N
0.859
GRMZM2G099186
Zea mays
GRMZM2G099186
N
0.848
LOC_Os03g17710
Oryza sativa
LOC_Os03g17710
N
0.848
BRADI2G37640
Brachypodium distachyon
BRADI2G37640
N
0.848
GRMZM2G175419
Zea mays
GRMZM2G175419
N
0.848
LOC_Os05g02880
Oryza sativa
LOC_Os05g02880
N
0.838
SB09G001910
Sorghum bicolor
Sb09g001910
N
0.838
BGIOSIBCE017351
Oryza indica
BGIOSIBCE017351
N
0.838
LjT38D03.80.nd
Lotus japonicus
LjT38D03.80.nd
N
0.838
GRMZM2G099317
Zea mays
GRMZM2G099317
N
0.828
BRADI2G00370
Brachypodium distachyon
BRADI2G00370
N
0.828
GRMZM2G474658
Zea mays
GRMZM2G474658
N
0.818
BGIOSIBCE000441
Oryza indica
BGIOSIBCE000441
N
0.808
LOC_Os01g06290
Oryza sativa
LOC_Os01g06290
N
0.808
BRADI2G34687
Brachypodium distachyon
BRADI2G34687
N
0.808
SB03G005500
Sorghum bicolor
Sb03g005500
N
0.798