CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI2G34687
(
Brachypodium distachyon
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
BRADI2G34687
T07181_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI2G34687.1
RRM
41
103
LYVGRLSTRTRTQDVEYLFGRYGRVRNVELKHDYGFVEFSDPRDADDARYELDGRDFDGSRII
BRADI2G34687.1
CCHC ZF
130
147
GRCFNCGIEGHWARDCKA
BRADI2G34687.1
CCHC ZF
152
169
NKCYRCGEMGHIEKNCQN
Links
Other
CCHC ZF,RRM
family RBPs
Other
Brachypodium distachyon
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os03g17710
Oryza sativa
LOC_Os03g17710
N
0.838
BRADI2G37640
Brachypodium distachyon
BRADI2G37640
N
0.838
GSVIVG00032633001
Vitis vinifera
GSVIVG00032633001
N
0.838
SB09G001910
Sorghum bicolor
Sb09g001910
N
0.818
At-RS2Z
Arabidopsis thaliana
AT3G53500-TAIR-G
N
0.818
chr1.CM0033.20.nd
Lotus japonicus
chr1.CM0033.20.nd
N
0.818
LjT38D03.70.nd
Lotus japonicus
LjT38D03.70.nd
N
0.818
Glyma03g33270.1
Glycine max
Glyma03g33270.1
N
0.808
AC235022_4
Medicago truncatula
AC235022_4
N
0.808
cassava28871.valid.m1
Manihot esculenta
cassava28871.valid.m1
N
0.808
GRMZM2G474658
Zea mays
GRMZM2G474658
N
0.808
GRMZM2G175419
Zea mays
GRMZM2G175419
N
0.808
cassava28872.valid.m1
Manihot esculenta
cassava28872.valid.m1
N
0.808
BGIOSIBCE017351
Oryza indica
BGIOSIBCE017351
N
0.808
BRADI2G00370
Brachypodium distachyon
BRADI2G00370
N
0.808
LOC_Os05g02880
Oryza sativa
LOC_Os05g02880
N
0.808
XM_002877876.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5001437
N
0.808
RS2Z33
Arabidopsis thaliana
AT2G37340-TAIR-G
N
0.798
GRMZM2G099186
Zea mays
GRMZM2G099186
N
0.798
29805.m001527
Ricinus communis
29805.m001527
N
0.798
Glyma19g35990.1
Glycine max
Glyma19g35990.1
N
0.798
Sb09g001920
Sorghum bicolor
Sb09g001920
N
0.798
BGIOSIBCE000441
Oryza indica
BGIOSIBCE000441
N
0.788
LOC_Os01g06290
Oryza sativa
LOC_Os01g06290
N
0.788
B9IIW9_POPTR
Populus trichocarpa
POPTR_0016s08250
N
0.788
GRMZM2G099317
Zea mays
GRMZM2G099317
N
0.788
PK26144.1
Cannabis sativa
PK26144.1
N
0.778
ppa009074m
Prunus persica
ppa009074m
N
0.778
Glyma19g35980.1
Glycine max
Glyma19g35980.1
N
0.778
A9PGS4_POPTR
Populus trichocarpa
POPTR_0006s23170
N
0.778
SB03G005500
Sorghum bicolor
Sb03g005500
N
0.778
Glyma03g33260.1
Glycine max
Glyma03g33260.1
N
0.778
mgf009930m
Mimulus guttatus
mgf009930m
N
0.778
cassava441.valid.m1
Manihot esculenta
cassava441.valid.m1
N
0.768
ppa009294m
Prunus persica
ppa009294m
N
0.768
LjT38D03.80.nd
Lotus japonicus
LjT38D03.80.nd
N
0.737