ENSCSAVG00000007538 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000007538 T35996_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000012834 RRM 73 143
ENSCSAVP00000012834 RRM 161 229
ENSCSAVP00000012834 RRM 461 531
ENSCSAVP00000012835 RRM 73 143
ENSCSAVP00000012835 RRM 163 231
ENSCSAVP00000012835 RRM 446 516
ENSCSAVP00000012836 RRM 73 143
ENSCSAVP00000012836 RRM 161 229
ENSCSAVP00000012836 RRM 432 502
ENSCSAVP00000012837 RRM 73 143
ENSCSAVP00000012837 RRM 161 229
ENSCSAVP00000012837 RRM 432 458
ENSCSAVP00000012837 RRM 456 483
ENSCSAVP00000012838 RRM 73 143
ENSCSAVP00000012838 RRM 163 231
ENSCSAVP00000012838 RRM 443 490
ENSCSAVP00000012838 RRM 503 536
ENSCSAVP00000012839 RRM 26 96
ENSCSAVP00000012839 RRM 116 184
ENSCSAVP00000012839 RRM 397 467
ENSCSAVP00000012840 RRM 14 84
ENSCSAVP00000012840 RRM 104 172
ENSCSAVP00000012840 RRM 391 461
ENSCSAVP00000012841 RRM 12 82
ENSCSAVP00000012841 RRM 83 125
ENSCSAVP00000012841 RRM 329 399
ENSCSAVP00000012842 RRM 10 80
ENSCSAVP00000012842 RRM 100 168
ENSCSAVP00000012842 RRM 404 474
ENSCSAVP00000012843 RRM 9 79
ENSCSAVP00000012843 RRM 97 165
ENSCSAVP00000012843 RRM 389 459

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA81375 Xenopus laevis AAA81375 I 0.711
AAH46942 Xenopus laevis AAH46942 I 0.706
AAH57704 Xenopus laevis AAH57704 I 0.711
AAH72134 Xenopus laevis AAH72134 I 0.711
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.706
ENSCING00000001999 Ciona intestinalis ENSCING00000001999 I 0.948
celf3 Danio rerio ENSDARG00000034668 I 0.706
celf5 Danio rerio ENSDARG00000071375 I 0.720
BRUNOL5 Homo sapiens ENSG00000161082 D 0.706
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.706
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.716
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.725
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.711
Celf4 Mus musculus ENSMUSG00000024268 I 0.720
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.725
CELF5 Oryzias latipes ENSORLG00000004600 I 0.720
CELF4 Oryzias latipes ENSORLG00000008913 I 0.735
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.716
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.701
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.716
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.730
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.720
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.706
Q91579 Xenopus laevis Q91579 I 0.711