celf3 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000034668 T36124_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.824
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.800
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.749
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000039628 RRM 9 78
ENSDARP00000039628 RRM 96 164
ENSDARP00000039628 RRM 369 439

Links

Other RRM family RBPs
Other Danio rerio RBPs

83 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.962
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.929
AAH72134 Xenopus laevis AAH72134 I 0.919
Q91579 Xenopus laevis Q91579 I 0.919
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.919
AAH57704 Xenopus laevis AAH57704 I 0.919
AAA81375 Xenopus laevis AAA81375 I 0.919
AAH46942 Xenopus laevis AAH46942 I 0.910
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.910
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.900
Celf3 Mus musculus ENSMUSG00000028137 I 0.895
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.895
CELF3 Equus caballus ENSECAG00000020365 I 0.895
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.895
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.895
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.895
CELF3 Danio rerio ENSDARG00000006983 I 0.895
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.895
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.895
CELF3 Canis familiaris ENSCAFG00000012794 I 0.895
CELF3 Homo sapiens ENSG00000159409 I 0.895
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.895
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.895
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.895
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.895
CELF3 Sus scrofa ENSSSCG00000006618 I 0.881
CELF3 Oryzias latipes ENSORLG00000010447 I 0.872
CELF3 Procavia capensis ENSPCAG00000001623 I 0.871
CELF4 Oryzias latipes ENSORLG00000008913 I 0.867
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.867
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.862
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.857
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.857
Celf4 Mus musculus ENSMUSG00000024268 I 0.852
celf5 Danio rerio ENSDARG00000071375 I 0.848
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.838
CELF5 Oryzias latipes ENSORLG00000004600 I 0.838
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.838
ACH69785 Xenopus laevis ACH69785 I 0.833
CELF3 Oryzias latipes ENSORLG00000002630 I 0.825
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.824
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.824
BRUNOL5 Homo sapiens ENSG00000161082 D 0.824
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.819
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.810
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.805
Celf6 Mus musculus ENSMUSG00000032297 I 0.805
HEXA Macaca mulatta ENSMMUG00000010687 I 0.800
CELF6 Bos taurus ENSBTAG00000014092 I 0.800
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.800
CELF6 Sus scrofa ENSSSCG00000001928 I 0.800
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.800
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.800
CELF6 Felis catus ENSFCAG00000016249 I 0.800
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.800
BRUNOL6 Homo sapiens ENSG00000140488 D 0.800
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.795
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.795
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.795
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.786
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.783
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.776
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.763
ACH69784 Xenopus laevis ACH69784 I 0.763
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.758
Bm1_27610 Brugia malayi Bm1_27610 I 0.757
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.754
BRUNOL4 Homo sapiens ENSG00000101489 D 0.754
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.754
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.754
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.752
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.749
CBG15358 Caenorhabditis briggsae CBG15358 I 0.749
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.749
CRE09771 Caenorhabditis remanei CRE09771 I 0.749
CELF3 Pteropus vampyrus ENSPVAG00000015012 N 0.744
unc-75 Caenorhabditis elegans C17D12.2 D 0.739
CELF3 Tursiops truncatus ENSTTRG00000009835 N 0.730
CELF3 Microcebus murinus ENSMICG00000010644 N 0.724
CELF3 Dasypus novemcinctus ENSDNOG00000011384 N 0.720
ENSCING00000001999 Ciona intestinalis ENSCING00000001999 I 0.711
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.710
ENSCSAVG00000007538 Ciona savignyi ENSCSAVG00000007538 I 0.706