CELF4 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000008913 T40163_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.867
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.834
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.829
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.758
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000011182 RRM 1 33
ENSORLP00000011182 RRM 52 120
ENSORLP00000011182 RRM 360 403
ENSORLP00000011184 RRM 53 122
ENSORLP00000011184 RRM 141 209
ENSORLP00000011184 RRM 443 513

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

94 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.971
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.957
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.952
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.952
Celf4 Mus musculus ENSMUSG00000024268 I 0.948
celf5 Danio rerio ENSDARG00000071375 I 0.895
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.890
CELF5 Oryzias latipes ENSORLG00000004600 I 0.886
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.882
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.867
BRUNOL5 Homo sapiens ENSG00000161082 D 0.867
celf3 Danio rerio ENSDARG00000034668 I 0.867
AAH46942 Xenopus laevis AAH46942 I 0.862
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.862
ACH69785 Xenopus laevis ACH69785 I 0.862
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.862
AAH72134 Xenopus laevis AAH72134 I 0.857
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.857
Q91579 Xenopus laevis Q91579 I 0.857
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.857
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.857
AAA81375 Xenopus laevis AAA81375 I 0.857
AAH57704 Xenopus laevis AAH57704 I 0.857
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.852
ACH69784 Xenopus laevis ACH69784 I 0.848
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.848
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.844
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.839
BRUNOL4 Homo sapiens ENSG00000101489 D 0.839
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.839
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.839
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.838
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.838
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.834
Celf6 Mus musculus ENSMUSG00000032297 I 0.833
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.833
CELF6 Bos taurus ENSBTAG00000014092 I 0.829
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.829
BRUNOL6 Homo sapiens ENSG00000140488 D 0.829
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.829
HEXA Macaca mulatta ENSMMUG00000010687 I 0.829
CELF6 Sus scrofa ENSSSCG00000001928 I 0.829
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.829
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.829
CELF6 Felis catus ENSFCAG00000016249 I 0.829
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.824
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.819
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.815
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.811
CELF3 Oryzias latipes ENSORLG00000010447 I 0.803
CELF3 Danio rerio ENSDARG00000006983 I 0.800
celf4 Danio rerio ENSDARG00000070045 I 0.799
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.795
Celf3 Mus musculus ENSMUSG00000028137 I 0.795
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.795
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.795
CELF3 Equus caballus ENSECAG00000020365 I 0.795
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.795
CELF3 Homo sapiens ENSG00000159409 I 0.795
CELF3 Canis familiaris ENSCAFG00000012794 I 0.795
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.795
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.795
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.795
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.795
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.795
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.795
Bm1_27610 Brugia malayi Bm1_27610 I 0.781
CELF3 Sus scrofa ENSSSCG00000006618 I 0.781
CELF4 Tetraodon nigroviridis ENSTNIG00000010679 I 0.773
CELF3 Procavia capensis ENSPCAG00000001623 I 0.771
CBG15358 Caenorhabditis briggsae CBG15358 I 0.768
CRE09771 Caenorhabditis remanei CRE09771 I 0.768
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.767
CELF4 Ochotona princeps ENSOPRG00000014415 I 0.763
unc-75 Caenorhabditis elegans C17D12.2 D 0.758
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.757
BRUNOL6 Taeniopygia guttata ENSTGUG00000004278 N 0.755
ENSCING00000001999 Ciona intestinalis ENSCING00000001999 I 0.744
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.744
A6H776_BOVIN Bos taurus ENSBTAG00000004940 I 0.743
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.736
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.736
ENSCSAVG00000007538 Ciona savignyi ENSCSAVG00000007538 I 0.735
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.733
CELF5 Meleagris gallopavo ENSMGAG00000001169 I 0.730
BRUNOL5 Taeniopygia guttata ENSTGUG00000000514 I 0.730
CELF4 Macaca mulatta ENSMMUG00000006866 I 0.730
CELF3 Oryzias latipes ENSORLG00000002630 I 0.716
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.714
ENSDARG00000076682 Danio rerio ENSDARG00000076682 I 0.712
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.712
CELF5 Canis familiaris ENSCAFG00000019263 I 0.707
CELF5 Tursiops truncatus ENSTTRG00000009625 I 0.701
CELF5 Pteropus vampyrus ENSPVAG00000014619 I 0.701