CELF4 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000015481 T42355_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.852
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.814
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.812
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000039593 RRM 54 123
ENSTRUP00000039593 RRM 142 210
ENSTRUP00000039593 RRM 411 481
ENSTRUP00000039594 RRM 54 123
ENSTRUP00000039594 RRM 154 222
ENSTRUP00000039594 RRM 393 442
ENSTRUP00000039595 RRM 53 122
ENSTRUP00000039595 RRM 141 209
ENSTRUP00000039595 RRM 441 511

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

90 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CELF4 Oryzias latipes ENSORLG00000008913 I 0.971
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.933
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.929
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.929
Celf4 Mus musculus ENSMUSG00000024268 I 0.924
celf5 Danio rerio ENSDARG00000071375 I 0.881
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.876
CELF5 Oryzias latipes ENSORLG00000004600 I 0.871
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.853
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.852
BRUNOL5 Homo sapiens ENSG00000161082 D 0.852
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.848
AAH46942 Xenopus laevis AAH46942 I 0.848
ACH69785 Xenopus laevis ACH69785 I 0.843
Q91579 Xenopus laevis Q91579 I 0.843
AAH57704 Xenopus laevis AAH57704 I 0.843
AAH72134 Xenopus laevis AAH72134 I 0.843
AAA81375 Xenopus laevis AAA81375 I 0.843
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.843
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.838
celf3 Danio rerio ENSDARG00000034668 I 0.838
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.838
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.833
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.831
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.831
BRUNOL4 Homo sapiens ENSG00000101489 D 0.831
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.829
ACH69784 Xenopus laevis ACH69784 I 0.825
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.824
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.824
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.819
Celf6 Mus musculus ENSMUSG00000032297 I 0.819
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.819
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.815
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.815
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.814
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.814
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.814
BRUNOL6 Homo sapiens ENSG00000140488 D 0.814
CELF6 Sus scrofa ENSSSCG00000001928 I 0.814
HEXA Macaca mulatta ENSMMUG00000010687 I 0.814
CELF6 Felis catus ENSFCAG00000016249 I 0.814
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.814
CELF6 Bos taurus ENSBTAG00000014092 I 0.814
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.810
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.810
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.805
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.797
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.791
CELF3 Oryzias latipes ENSORLG00000010447 I 0.789
CELF4 Ochotona princeps ENSOPRG00000014415 I 0.788
CELF3 Danio rerio ENSDARG00000006983 I 0.786
Celf3 Mus musculus ENSMUSG00000028137 I 0.781
CELF3 Canis familiaris ENSCAFG00000012794 I 0.781
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.781
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.781
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.781
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.781
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.781
CELF3 Homo sapiens ENSG00000159409 I 0.781
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.781
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.781
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.781
CELF3 Equus caballus ENSECAG00000020365 I 0.781
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.781
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.781
celf4 Danio rerio ENSDARG00000070045 I 0.767
Bm1_27610 Brugia malayi Bm1_27610 I 0.767
CELF3 Sus scrofa ENSSSCG00000006618 I 0.767
CELF4 Tetraodon nigroviridis ENSTNIG00000010679 I 0.763
CELF6 Macropus eugenii ENSMEUG00000010988 I 0.760
CELF3 Procavia capensis ENSPCAG00000001623 I 0.757
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.752
CRE09771 Caenorhabditis remanei CRE09771 I 0.744
CBG15358 Caenorhabditis briggsae CBG15358 I 0.744
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.743
unc-75 Caenorhabditis elegans C17D12.2 D 0.735
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.730
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.729
ENSCING00000001999 Ciona intestinalis ENSCING00000001999 I 0.725
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.722
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.722
A6H776_BOVIN Bos taurus ENSBTAG00000004940 I 0.719
ENSCSAVG00000007538 Ciona savignyi ENSCSAVG00000007538 I 0.716
CELF5 Meleagris gallopavo ENSMGAG00000001169 I 0.710
BRUNOL5 Taeniopygia guttata ENSTGUG00000000514 I 0.710
CELF4 Macaca mulatta ENSMMUG00000006866 I 0.706
CELF6 Tursiops truncatus ENSTTRG00000002503 I 0.702
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.700