estExt_Genewise1Plus.C_6380019 (Capitella teleta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1Plus.C_6380019 T51492_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.829
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.805
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.758
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.744
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_6380019 RRM 19 88
estExt_Genewise1Plus.C_6380019 RRM 107 175
estExt_Genewise1Plus.C_6380019 RRM 379 449

Links

Other RRM family RBPs
Other Capitella teleta RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.867
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.862
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.862
CELF4 Oryzias latipes ENSORLG00000008913 I 0.862
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.857
Celf4 Mus musculus ENSMUSG00000024268 I 0.857
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.843
ACH69785 Xenopus laevis ACH69785 I 0.843
celf5 Danio rerio ENSDARG00000071375 I 0.843
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.843
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.838
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.833
CELF5 Oryzias latipes ENSORLG00000004600 I 0.833
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.829
BRUNOL5 Homo sapiens ENSG00000161082 D 0.829
AAH57704 Xenopus laevis AAH57704 I 0.824
AAA81375 Xenopus laevis AAA81375 I 0.824
Q91579 Xenopus laevis Q91579 I 0.824
AAH72134 Xenopus laevis AAH72134 I 0.824
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.819
celf3 Danio rerio ENSDARG00000034668 I 0.819
CELF3 Equus caballus ENSECAG00000020365 I 0.814
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.814
CELF3 Homo sapiens ENSG00000159409 I 0.814
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.814
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.814
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.814
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.814
CELF3 Canis familiaris ENSCAFG00000012794 I 0.814
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.814
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.814
AAH46942 Xenopus laevis AAH46942 I 0.814
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.814
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.814
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.814
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.814
Celf3 Mus musculus ENSMUSG00000028137 I 0.814
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.814
Celf6 Mus musculus ENSMUSG00000032297 I 0.810
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.810
HEXA Macaca mulatta ENSMMUG00000010687 I 0.805
CELF6 Felis catus ENSFCAG00000016249 I 0.805
CELF6 Bos taurus ENSBTAG00000014092 I 0.805
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.805
BRUNOL6 Homo sapiens ENSG00000140488 D 0.805
CELF6 Sus scrofa ENSSSCG00000001928 I 0.805
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.805
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.805
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.805
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.800
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.800
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.800
Bm1_27610 Brugia malayi Bm1_27610 I 0.795
CELF3 Sus scrofa ENSSSCG00000006618 I 0.795
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.795
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.788
CELF3 Procavia capensis ENSPCAG00000001623 I 0.786
CELF3 Oryzias latipes ENSORLG00000010447 I 0.784
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.781
CELF3 Danio rerio ENSDARG00000006983 I 0.776
ACH69784 Xenopus laevis ACH69784 I 0.773
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.773
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.768
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.763
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.763
BRUNOL4 Homo sapiens ENSG00000101489 D 0.763
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.763
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.759
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.759
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.758
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.754
unc-75 Caenorhabditis elegans C17D12.2 D 0.744
CBG15358 Caenorhabditis briggsae CBG15358 I 0.739
CRE09771 Caenorhabditis remanei CRE09771 I 0.739
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.738
ENSCING00000001999 Ciona intestinalis ENSCING00000001999 I 0.720
ENSCSAVG00000007538 Ciona savignyi ENSCSAVG00000007538 I 0.720
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.719
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.719