ENSCING00000001999 (Ciona intestinalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCING00000001999 T35361_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000004037 RRM 9 79
ENSCINP00000004037 RRM 97 165
ENSCINP00000004037 RRM 345 415
ENSCINP00000004042 RRM 9 79
ENSCINP00000004042 RRM 98 166
ENSCINP00000004042 RRM 343 413
ENSCINP00000004047 RRM 9 79
ENSCINP00000004047 RRM 98 166
ENSCINP00000004047 RRM 361 431

Links

Other RRM family RBPs
Other Ciona intestinalis RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCSAVG00000007538 Ciona savignyi ENSCSAVG00000007538 I 0.948
CELF4 Oryzias latipes ENSORLG00000008913 I 0.744
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.739
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.735
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.735
CELF5 Oryzias latipes ENSORLG00000004600 I 0.735
celf5 Danio rerio ENSDARG00000071375 I 0.735
Celf4 Mus musculus ENSMUSG00000024268 I 0.730
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.725
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.720
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.716
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.716
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.711
celf3 Danio rerio ENSDARG00000034668 I 0.711
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.706
BRUNOL5 Homo sapiens ENSG00000161082 D 0.706
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.706
Q91579 Xenopus laevis Q91579 I 0.701
AAH72134 Xenopus laevis AAH72134 I 0.701
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.701
AAA81375 Xenopus laevis AAA81375 I 0.701
AAH57704 Xenopus laevis AAH57704 I 0.701