CELF3 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000008062 T42057_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.857
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.833
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.758
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.744
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000010886 RRM 9 78
ENSTNIP00000010886 RRM 100 167
ENSTNIP00000010886 RRM 373 443

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

87 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.990
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.971
AAH57704 Xenopus laevis AAH57704 I 0.933
AAA81375 Xenopus laevis AAA81375 I 0.933
AAH72134 Xenopus laevis AAH72134 I 0.933
Q91579 Xenopus laevis Q91579 I 0.933
CELF3 Oryzias latipes ENSORLG00000010447 I 0.931
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.924
AAH46942 Xenopus laevis AAH46942 I 0.924
celf3 Danio rerio ENSDARG00000034668 I 0.919
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.919
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.914
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.914
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.914
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.914
CELF3 Canis familiaris ENSCAFG00000012794 I 0.914
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.914
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.914
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.914
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.914
CELF3 Equus caballus ENSECAG00000020365 I 0.914
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.914
CELF3 Homo sapiens ENSG00000159409 I 0.914
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.914
Celf3 Mus musculus ENSMUSG00000028137 I 0.914
CELF3 Danio rerio ENSDARG00000006983 I 0.900
CELF3 Sus scrofa ENSSSCG00000006618 I 0.895
CELF3 Procavia capensis ENSPCAG00000001623 I 0.886
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.881
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.881
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.871
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.867
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.867
Celf4 Mus musculus ENSMUSG00000024268 I 0.862
celf5 Danio rerio ENSDARG00000071375 I 0.862
BRUNOL5 Homo sapiens ENSG00000161082 D 0.857
CELF5 Oryzias latipes ENSORLG00000004600 I 0.857
CELF4 Oryzias latipes ENSORLG00000008913 I 0.857
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.857
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.843
ACH69785 Xenopus laevis ACH69785 I 0.843
CELF6 Sus scrofa ENSSSCG00000001928 I 0.838
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.838
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.838
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.838
CELF6 Bos taurus ENSBTAG00000014092 I 0.838
CELF6 Felis catus ENSFCAG00000016249 I 0.838
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.838
Celf6 Mus musculus ENSMUSG00000032297 I 0.838
HEXA Macaca mulatta ENSMMUG00000010687 I 0.833
BRUNOL6 Homo sapiens ENSG00000140488 D 0.833
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.833
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.833
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.833
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.829
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.829
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.819
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.819
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.816
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.810
CELF3 Oryzias latipes ENSORLG00000002630 I 0.791
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.787
Bm1_27610 Brugia malayi Bm1_27610 I 0.786
ACH69784 Xenopus laevis ACH69784 I 0.773
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.771
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.768
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.763
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.763
BRUNOL4 Homo sapiens ENSG00000101489 D 0.763
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.763
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.758
CELF3 Pteropus vampyrus ENSPVAG00000015012 N 0.754
CRE09771 Caenorhabditis remanei CRE09771 I 0.749
CBG15358 Caenorhabditis briggsae CBG15358 I 0.749
CELF3 Tursiops truncatus ENSTTRG00000009835 N 0.744
unc-75 Caenorhabditis elegans C17D12.2 D 0.744
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.744
CELF3 Microcebus murinus ENSMICG00000010644 N 0.738
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.738
CELF3 Dasypus novemcinctus ENSDNOG00000011384 N 0.735
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.730
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.724
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.722
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.722
ENSCSAVG00000007538 Ciona savignyi ENSCSAVG00000007538 I 0.716
ENSCING00000001999 Ciona intestinalis ENSCING00000001999 I 0.716
celf4 Danio rerio ENSDARG00000070045 I 0.700