celf4 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000020486 T42930_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.877
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.876
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.843
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.758
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000044293 RRM 24 93
ENSXETP00000044293 RRM 114 182
ENSXETP00000044293 RRM 398 468

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

94 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.995
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.995
Celf4 Mus musculus ENSMUSG00000024268 I 0.990
CELF4 Oryzias latipes ENSORLG00000008913 I 0.957
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.933
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.914
celf5 Danio rerio ENSDARG00000071375 I 0.895
ACH69784 Xenopus laevis ACH69784 I 0.891
CELF5 Oryzias latipes ENSORLG00000004600 I 0.890
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.886
BRUNOL4 Homo sapiens ENSG00000101489 D 0.882
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.882
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.882
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.882
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.877
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.876
BRUNOL5 Homo sapiens ENSG00000161082 D 0.876
AAA81375 Xenopus laevis AAA81375 I 0.871
AAH72134 Xenopus laevis AAH72134 I 0.871
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.871
Q91579 Xenopus laevis Q91579 I 0.871
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.871
AAH57704 Xenopus laevis AAH57704 I 0.871
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.867
AAH46942 Xenopus laevis AAH46942 I 0.867
ACH69785 Xenopus laevis ACH69785 I 0.867
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.867
celf3 Danio rerio ENSDARG00000034668 I 0.862
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.857
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.857
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.857
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.852
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.848
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.848
Celf6 Mus musculus ENSMUSG00000032297 I 0.848
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.848
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.843
HEXA Macaca mulatta ENSMMUG00000010687 I 0.843
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.843
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.843
CELF6 Sus scrofa ENSSSCG00000001928 I 0.843
CELF6 Felis catus ENSFCAG00000016249 I 0.843
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.843
BRUNOL6 Homo sapiens ENSG00000140488 D 0.843
CELF6 Bos taurus ENSBTAG00000014092 I 0.843
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.838
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.834
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.829
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.825
CELF3 Oryzias latipes ENSORLG00000010447 I 0.821
CELF3 Danio rerio ENSDARG00000006983 I 0.819
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.814
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.814
Celf3 Mus musculus ENSMUSG00000028137 I 0.814
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.814
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.814
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.814
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.814
CELF3 Equus caballus ENSECAG00000020365 I 0.814
CELF3 Canis familiaris ENSCAFG00000012794 I 0.814
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.814
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.814
CELF3 Homo sapiens ENSG00000159409 I 0.814
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.814
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.814
CELF4 Ochotona princeps ENSOPRG00000014415 I 0.801
CELF3 Sus scrofa ENSSSCG00000006618 I 0.800
Bm1_27610 Brugia malayi Bm1_27610 I 0.795
CELF3 Procavia capensis ENSPCAG00000001623 I 0.790
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.786
A6H776_BOVIN Bos taurus ENSBTAG00000004940 I 0.776
CBG15358 Caenorhabditis briggsae CBG15358 I 0.773
CRE09771 Caenorhabditis remanei CRE09771 I 0.773
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.771
CELF4 Macaca mulatta ENSMMUG00000006866 I 0.763
celf4 Danio rerio ENSDARG00000070045 I 0.762
unc-75 Caenorhabditis elegans C17D12.2 D 0.758
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.754
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.752
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.745
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.745
CELF4 Tetraodon nigroviridis ENSTNIG00000010679 I 0.744
ENSCING00000001999 Ciona intestinalis ENSCING00000001999 I 0.739
ENSDARG00000076682 Danio rerio ENSDARG00000076682 I 0.736
ENSCSAVG00000007538 Ciona savignyi ENSCSAVG00000007538 I 0.730
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.729
CELF3 Oryzias latipes ENSORLG00000002630 I 0.725
CELF5 Meleagris gallopavo ENSMGAG00000001169 I 0.724
BRUNOL5 Taeniopygia guttata ENSTGUG00000000514 I 0.724
CELF6 Macropus eugenii ENSMEUG00000010988 I 0.717
CELF5 Canis familiaris ENSCAFG00000019263 I 0.710
CELF5 Pteropus vampyrus ENSPVAG00000014619 I 0.705
CELF5 Tursiops truncatus ENSTTRG00000009625 I 0.705
CELF5 Sus scrofa ENSSSCG00000013476 I 0.701