CELF5 (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000013476 T41503_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.788
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000014323 RRM 1 30
ENSSSCP00000014323 RRM 49 118
ENSSSCP00000014323 RRM 316 386

Links

Other RRM family RBPs
Other Sus scrofa RBPs

30 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29890.m000285 Ricinus communis 29890.m000285 N 0.000
29929.m004643 Ricinus communis 29929.m004643 N 0.000
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.000
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.000
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.000
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.000
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.000
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.000
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.000
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.000
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.000
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.000
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.000
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.000
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.000
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.000
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.000
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.000
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.000
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.000
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.000
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.000
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.000
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.000
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.000
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.000
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.000
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.000
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.000
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.000
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.000
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.000
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.000
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.000
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.000
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.000
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.000
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.000
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.000
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.000
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.000
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.000
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.000
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.000
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.000
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.000
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.000
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.000
MDP0000132385 Malus x domestica MDP0000132385 N 0.000
MDP0000171737 Malus x domestica MDP0000171737 N 0.000
MDP0000189157 Malus x domestica MDP0000189157 N 0.000
MDP0000248088 Malus x domestica MDP0000248088 N 0.000
MDP0000287088 Malus x domestica MDP0000287088 N 0.000
MDP0000299155 Malus x domestica MDP0000299155 N 0.000
MDP0000306387 Malus x domestica MDP0000306387 N 0.000
MDP0000405927 Malus x domestica MDP0000405927 N 0.000
MDP0000552419 Malus x domestica MDP0000552419 N 0.000
MDP0000617859 Malus x domestica MDP0000617859 N 0.000
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.000
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.000
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.000
mgf019821m Mimulus guttatus mgf019821m N 0.000
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.000
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.000
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.000
PK01736.1 Cannabis sativa PK01736.1 N 0.000
PK05579.1 Cannabis sativa PK05579.1 N 0.000
PK17832.1 Cannabis sativa PK17832.1 N 0.000
PK23104.1 Cannabis sativa PK23104.1 N 0.000
PK26094.1 Cannabis sativa PK26094.1 N 0.000
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.000
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.000
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.000
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.000
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.000
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.000
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.000
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.000
ppa002483m Prunus persica ppa002483m N 0.000
ppa002588m Prunus persica ppa002588m N 0.000
ppa002677m Prunus persica ppa002677m N 0.000
ppa003664m Prunus persica ppa003664m N 0.000
ppa018635m Prunus persica ppa018635m N 0.000
SB01G008170 Sorghum bicolor Sb01g008170 N 0.000
SB03G031190 Sorghum bicolor Sb03g031190 N 0.000
SB06G027960 Sorghum bicolor Sb06g027960 N 0.000
SB07G006330 Sorghum bicolor Sb07g006330 N 0.000
SB07G024500 Sorghum bicolor Sb07g024500 N 0.000