RBM47 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000014050 T42344_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000014267
M234_0.6 		Gallus gallus GAUGAW RNAcompete
Ray et al.(2013)
RNCMPT00279 		0.891
ENSXETG00000012802
M235_0.6 		Xenopus tropicalis GAUGAWH RNAcompete
Ray et al.(2013)
RNCMPT00280 		0.886
RBM46
M052_0.6 		Homo sapiens RAUSAWD RNAcompete
Ray et al.(2013)
RNCMPT00054 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000035944 RRM 85 153
ENSTRUP00000035944 RRM 165 232
ENSTRUP00000035944 RRM 260 324
ENSTRUP00000035945 RRM 74 142
ENSTRUP00000035945 RRM 154 221
ENSTRUP00000035945 RRM 249 313
ENSTRUP00000035946 RRM 74 142
ENSTRUP00000035946 RRM 154 221
ENSTRUP00000035946 RRM 249 313

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

99 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.881
Ame_R017773 Ailuropoda melanoleuca Ame_R017773 I 0.723
RBM47 Anolis carolinensis ENSACAG00000011833 I 0.886
A1CF Anolis carolinensis ENSACAG00000015269 I 0.709
RBM46 Anolis carolinensis ENSACAG00000015599 I 0.728
RBM46 Bos taurus ENSBTAG00000001696 I 0.723
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.881
A1CF Bos taurus ENSBTAG00000021195 I 0.704
RBM46 Canis familiaris ENSCAFG00000008473 I 0.723
RBM47_CANFA Canis familiaris ENSCAFG00000015898 I 0.876
RBM46 Choloepus hoffmanni ENSCHOG00000003429 I 0.723
A1CF Choloepus hoffmanni ENSCHOG00000009089 I 0.709
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.886
ENSCING00000004101 Ciona intestinalis ENSCING00000004101 I 0.718
LOC100409217 Callithrix jacchus ENSCJAG00000001768 I 0.723
A1CF Callithrix jacchus ENSCJAG00000005045 I 0.709
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.886
A1CF Cavia porcellus ENSCPOG00000009807 I 0.709
ENSCPOG00000010284 Cavia porcellus ENSCPOG00000010284 I 0.708
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.886
ENSCPOG00000020396 Cavia porcellus ENSCPOG00000020396 I 0.719
ENSCSAVG00000000326 Ciona savignyi ENSCSAVG00000000326 I 0.733
a1cf Danio rerio ENSDARG00000002968 I 0.704
RBM47 Danio rerio ENSDARG00000061985 I 0.916
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.886
RBM46 Dasypus novemcinctus ENSDNOG00000016195 I 0.718
Rbm47 Dipodomys ordii ENSDORG00000010144 I 0.767
LOC100063743 Equus caballus ENSECAG00000004400 I 0.866
RBM46 Equus caballus ENSECAG00000007649 I 0.724
A1CF Equus caballus ENSECAG00000010424 I 0.704
RBM46 Erinaceus europaeus ENSEEUG00000011824 I 0.708
RBM47 Echinops telfairi ENSETEG00000009194 I 0.886
RBM46 Echinops telfairi ENSETEG00000014902 I 0.723
RBM46 Felis catus ENSFCAG00000009246 I 0.713
RBM47 Felis catus ENSFCAG00000012399 I 0.881
RBM46 Homo sapiens ENSG00000151962 D 0.723
RBM47 Homo sapiens ENSG00000163694 I 0.886
A1CF Gasterosteus aculeatus ENSGACG00000010241 I 0.714
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.960
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.891
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.886
RBM46 Gorilla gorilla ENSGGOG00000001876 I 0.723
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.881
RBM46 Loxodonta africana ENSLAFG00000015448 I 0.723
A1CF Loxodonta africana ENSLAFG00000015462 I 0.709
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.911
RBM46 Macropus eugenii ENSMEUG00000013328 I 0.723
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.891
RBM46 Myotis lucifugus ENSMLUG00000003221 I 0.723
A1CF Macaca mulatta ENSMMUG00000007077 I 0.709
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.886
RBM46 Macaca mulatta ENSMMUG00000021147 I 0.723
RBM46 Monodelphis domestica ENSMODG00000001302 I 0.723
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.911
ENSMODG00000015426 Monodelphis domestica ENSMODG00000015426 I 0.803
XM_001362366.1 Monodelphis domestica ENSMODG00000020561 I 0.852
Rbm46 Mus musculus ENSMUSG00000033882 I 0.728
A1cf Mus musculus ENSMUSG00000052595 I 0.709
Rbm47 Mus musculus ENSMUSG00000070780 I 0.881
RBM46 Ornithorhynchus anatinus ENSOANG00000002141 I 0.704
A1CF Ornithorhynchus anatinus ENSOANG00000007360 I 0.707
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.906
A1CF Oryctolagus cuniculus ENSOCUG00000011587 I 0.709
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.886
RBM46 Oryctolagus cuniculus ENSOCUG00000017859 I 0.723
RBM47 Oryzias latipes ENSORLG00000005847 I 0.960
RBM47 Procavia capensis ENSPCAG00000011879 I 0.886
ENSPPYG00000002819 Pongo pygmaeus ENSPPYG00000002819 I 0.709
ENSPPYG00000014688 Pongo pygmaeus ENSPPYG00000014688 I 0.872
ENSPPYG00000015144 Pongo pygmaeus ENSPPYG00000015144 I 0.723
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.886
RBM46 Pan troglodytes ENSPTRG00000016538 I 0.723
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.881
RBM46 Pteropus vampyrus ENSPVAG00000008376 I 0.723
Rbm47 Rattus norvegicus ENSRNOG00000002408 I 0.876
Rbm46 Rattus norvegicus ENSRNOG00000025823 I 0.723
A1cf Rattus norvegicus ENSRNOG00000033195 I 0.704
RBM47 Sorex araneus ENSSARG00000001735 I 0.886
RBM46 Sorex araneus ENSSARG00000006520 I 0.723
RBM47 Sus scrofa ENSSSCG00000008796 I 0.881
RBM46 Sus scrofa ENSSSCG00000008994 I 0.723
A1CF Sus scrofa ENSSSCG00000010431 I 0.709
RBM47 Spermophilus tridecemlineatus ENSSTOG00000004727 I 0.807
RBM47 Tupaia belangeri ENSTBEG00000001607 I 0.822
RBM46 Tupaia belangeri ENSTBEG00000013949 I 0.713
A1CF Taeniopygia guttata ENSTGUG00000005090 I 0.704
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.891
A1CF Tetraodon nigroviridis ENSTNIG00000003580 I 0.709
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.995
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.709
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.704
RBM46 Tarsius syrichta ENSTSYG00000010435 I 0.723
RBM46 Tursiops truncatus ENSTTRG00000001239 I 0.728
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.886
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.886
estExt_Genewise1Plus.C_20056 Capitella teleta estExt_Genewise1Plus.C_20056 I 0.712
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.716
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.704