FBgn0262475 (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0262475 T44428_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
aret
M110_0.6 		Drosophila melanogaster UKUKUGU RNAcompete
Ray et al.(2013)
RNCMPT00114 		0.758
aret
M003_0.6 		Drosophila melanogaster UKUKUGU RNAcompete
Ray et al.(2013)
RNCMPT00003 		0.758
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.707
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0293396 RRM 297 366
FBpp0293396 RRM 384 452
FBpp0293396 RRM 810 880
FBpp0293397 RRM 297 366
FBpp0293397 RRM 384 452
FBpp0293398 RRM 297 366
FBpp0293398 RRM 384 452
FBpp0293399 RRM 297 366
FBpp0293399 RRM 384 452
FBpp0293399 RRM 654 724
FBpp0293400 RRM 297 337
FBpp0293401 RRM 142 210
FBpp0293401 RRM 568 638
FBpp0293402 RRM 297 366
FBpp0293402 RRM 384 452
FBpp0293403 RRM 1 65
FBpp0293403 RRM 267 337
FBpp0293404 RRM 142 210
FBpp0293404 RRM 568 638

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL000695 Aedes aegypti AAEL000695 I 0.871
AAEL014033 Aedes aegypti AAEL014033 I 0.700
AGAP004950 Anopheles gambiae AGAP004950 I 0.700
AGAP009477 Anopheles gambiae AGAP009477 N 0.838
amel4_ncbi_hmm2537 Apis mellifera amel4_ncbi_hmm2537 N 0.707
BGIBMGA010431 Bombyx mori BGIBMGA010431 I 0.850
CPIJ016329 Culex quinquefasciatus CPIJ016329 I 0.886
CpipJ_CPIJ016329 Culex pipiens CpipJ_CPIJ016329 I 0.886
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 0.721
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.721
CELF2 Gorilla gorilla ENSGGOG00000009330 I 0.721
CELF2 Ornithorhynchus anatinus ENSOANG00000015432 I 0.721
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.700
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.700
estExt_fgenesh2_pm.C_730008 Branchiostoma floridae estExt_fgenesh2_pm.C_730008 I 0.793
e_gw1.172.82.1 Capitella teleta e_gw1.172.82.1 I 0.744
e_gw1.31.79.1 Lottia gigantea e_gw1.31.79.1 N 0.733
aret Drosophila melanogaster FBgn0000114 D 0.774
GF10965 Drosophila ananassae FBgn0088005 I 0.707
GF14192 Drosophila ananassae FBgn0091219 I 0.754
GG13757 Drosophila erecta FBgn0106020 I 0.707
GG23776 Drosophila erecta FBgn0115915 I 0.749
GG23780 Drosophila erecta FBgn0115919 N 0.993
GH11642 Drosophila grimshawi FBgn0119122 I 0.749
GH11645 Drosophila grimshawi FBgn0119125 I 0.952
GH14684 Drosophila grimshawi FBgn0122160 I 0.707
GI13095 Drosophila mojavensis FBgn0135852 I 0.707
GI17944 Drosophila mojavensis FBgn0140684 I 0.744
GL18622 Drosophila persimilis FBgn0156223 N 0.780
GL18624 Drosophila persimilis FBgn0156225 I 0.990
GM24582 Drosophila sechellia FBgn0179445 I 0.707
GM26763 Drosophila sechellia FBgn0181616 I 0.749
GM26785 Drosophila sechellia FBgn0181638 N 1.000
GD12651 Drosophila simulans FBgn0184378 I 0.707
GD23828 Drosophila simulans FBgn0195198 I 0.749
GJ13842 Drosophila virilis FBgn0201061 I 0.707
GJ17715 Drosophila virilis FBgn0204884 I 0.754
GJ17718 Drosophila virilis FBgn0204887 I 0.962
GK15493 Drosophila willistoni FBgn0217498 I 0.754
GK15495 Drosophila willistoni FBgn0217500 I 0.976
GK17101 Drosophila willistoni FBgn0219100 I 0.707
GE18580 Drosophila yakuba FBgn0235987 I 0.749
GE18585 Drosophila yakuba FBgn0235992 N 0.985
GE20053 Drosophila yakuba FBgn0237378 I 0.707
GA25725-RB Drosophila pseudoobscura FBgn0247102 I 0.754
GA25731-RA Drosophila pseudoobscura FBgn0247108 N 0.985
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.707
bru-3 Drosophila melanogaster FBgn0262350 D 0.707
LOAG_05508 Loa loa LOAG_05508 I 0.700
PHUM315130 Pediculus humanus PHUM315130 I 0.700
PHUM533900 Pediculus humanus PHUM533900 N 0.757