POPTR_0017s10590 (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0017s10590 T45693_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0017s10590.1 RRM 33 103
POPTR_0017s10590.1 RRM 123 172

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

1 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA81375 Xenopus laevis AAA81375 I 0.000
AAH46942 Xenopus laevis AAH46942 I 0.000
AAH57704 Xenopus laevis AAH57704 I 0.000
AAH72134 Xenopus laevis AAH72134 I 0.000
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.000
ENSCING00000001999 Ciona intestinalis ENSCING00000001999 I 0.000
ENSCSAVG00000007538 Ciona savignyi ENSCSAVG00000007538 I 0.000
celf3 Danio rerio ENSDARG00000034668 I 0.000
celf5 Danio rerio ENSDARG00000071375 I 0.000
BRUNOL5 Homo sapiens ENSG00000161082 D 0.000
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.000
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.000
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.000
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.000
Celf4 Mus musculus ENSMUSG00000024268 I 0.000
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.000
CELF5 Oryzias latipes ENSORLG00000004600 I 0.000
CELF4 Oryzias latipes ENSORLG00000008913 I 0.000
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.000
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.000
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.000
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.000
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.000
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.000
Q91579 Xenopus laevis Q91579 I 0.000