gw1.1.1171.1 (Sporobolomyces roseus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.1.1171.1 T53048_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.1.1171.1 RRM 25 95

Links

Other RRM family RBPs
Other Sporobolomyces roseus RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.000
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.746
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.704
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.732
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.718
ACLA_080400 Aspergillus clavatus CADACLAG00007885 N 0.000
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.718
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.746
An12g03930 Aspergillus niger CADANGAG00009835 N 0.732
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.746
CHGG_03355 Chaetomium globosum CHGG_03355 N 0.000
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.718
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.718
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.704
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.718
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.704
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.000
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.746
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.718
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.718
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.732
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.732
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.746
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.761
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.718
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.732
e_gw1.40.70.1 Melampsora laricis populina e_gw1.40.70.1 N 0.803
e_gw1.80.70.1 Selaginella moellendorfii e_gw1.80.70.1 N 0.732
fgenesh1_pg.C_scaffold_1000747 Cryphonectria parasitica fgenesh1_pg.C_scaffold_1000747 N 0.789
fgenesh1_pm.00772_#_82 Aspergillus carbonarius fgenesh1_pm.00772_#_82 N 0.732
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.746
FGSG_05488 Fusarium graminearum FGSG_05488 N 0.746
FOXG_09405 Fusarium oxysporum FOXG_09405 N 0.000
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.746
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.704
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.718
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.718
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.732
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.718
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.000
MCYG_04468 Microsporum canis MCYG_04468 N 0.718
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.704
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.718
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.000
NCU00210 Neurospora crassa NCU00210 N 0.732
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.718
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.746
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.732
PGTG_01720 Puccinia graminis PGTG_01720 N 0.803
PHUM535920 Pediculus humanus PHUM535920 N 0.000
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.732
PredSwiss_ASS2010_2397.2 Pneumocystis carinii PredSwiss_ASS2010_2397.2 N 0.000
PredSwiss_CON682.3 Pneumocystis carinii PredSwiss_CON682.3 N 0.000
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.718
SJAG_01064 Schizosaccharomyces japonicus SJAG_01064 N 0.761
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.718
SOCG_01831 Schizosaccharomyces octosporus SOCG_01831 N 0.732
cbc2 Schizosaccharomyces pombe SPBC13A2.01c N 0.761
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.718
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.732
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.718
TERG_03424 Trichophyton rubrum TERG_03424 N 0.718
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.718
VDAG_05874 Verticillium dahliae VDAG_05874 N 0.718
VDBG_06810 Verticillium albo atrum VDBG_06810 N 0.718