MBNL3 (Ornithorhynchus anatinus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSOANG00000011697 T03030_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.913
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.913
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOANP00000018536 CCCH ZF 1 14
ENSOANP00000018536 CCCH ZF 119 145
ENSOANP00000018536 CCCH ZF 156 179
ENSOANP00000018537 CCCH ZF 16 40
ENSOANP00000018537 CCCH ZF 57 72
ENSOANP00000018537 CCCH ZF 177 203
ENSOANP00000018537 CCCH ZF 214 237

Links

Other CCCH ZF family RBPs
Other Ornithorhynchus anatinus RBPs

129 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R017528 Ailuropoda melanoleuca Ame_R017528 N 0.000
SCAF8 Pan troglodytes ENSPTRG00000018727 N 0.000
XR_025194.1 Pan troglodytes ENSPTRG00000013848 N 0.000
ENSPPYG00000017121 Pongo pygmaeus ENSPPYG00000017121 N 0.000
ENSPPYG00000011355 Pongo pygmaeus ENSPPYG00000011355 N 0.000
SCAF4 Procavia capensis ENSPCAG00000009998 N 0.000
SCAF8 Oryzias latipes ENSORLG00000017358 N 0.000
SCAF8 Ochotona princeps ENSOPRG00000018413 N 0.000
SCAF4 Ochotona princeps ENSOPRG00000007016 N 0.000
SCAF8 Oryctolagus cuniculus ENSOCUG00000026063 N 0.000
SCAF4 Oryctolagus cuniculus ENSOCUG00000008336 N 0.000
Scaf8 Mus musculus ENSMUSG00000046201 N 0.000
Scaf4 Mus musculus ENSMUSG00000022983 N 0.000
SCAF4 Pteropus vampyrus ENSPVAG00000005220 N 0.000
SCAF8 Pteropus vampyrus ENSPVAG00000005582 N 0.000
SFR15_RAT Rattus norvegicus ENSRNOG00000002104 N 0.000
Ame_R017029 Ailuropoda melanoleuca Ame_R017029 N 0.000
SCAF8 Vicugna pacos ENSVPAG00000012465 N 0.000
SCAF4 Tursiops truncatus ENSTTRG00000010963 N 0.000
SCAF4 Tarsius syrichta ENSTSYG00000011344 N 0.000
SCAF8 Takifugu rubripes ENSTRUG00000009243 N 0.000
SCAF8 Tetraodon nigroviridis ENSTNIG00000016885 N 0.000
SFRS15 Taeniopygia guttata ENSTGUG00000013464 N 0.000
RBM16 Taeniopygia guttata ENSTGUG00000011151 N 0.000
SCAF4 Spermophilus tridecemlineatus ENSSTOG00000004450 N 0.000
SCAF8 Sus scrofa ENSSSCG00000004070 N 0.000
SCAF4 Sorex araneus ENSSARG00000009994 N 0.000
Rbm16 Rattus norvegicus ENSRNOG00000016919 N 0.000
SCAF4 Monodelphis domestica ENSMODG00000021040 N 0.000
SCAF8 Monodelphis domestica ENSMODG00000008301 N 0.000
SCAF8 Macaca mulatta ENSMMUG00000015163 N 0.000
SCAF4 Erinaceus europaeus ENSEEUG00000015913 N 0.000
SFRS15 Equus caballus ENSECAG00000014248 N 0.000
LOC100061852 Equus caballus ENSECAG00000005540 N 0.000
Scaf4 Dipodomys ordii ENSDORG00000013851 N 0.000
SCAF8 Danio rerio ENSDARG00000074786 N 0.000
ENSCPOG00000022216 Cavia porcellus ENSCPOG00000022216 N 0.000
SCAF4 Cavia porcellus ENSCPOG00000012443 N 0.000
LOC100390484 Callithrix jacchus ENSCJAG00000012631 N 0.000
LOC100392289 Callithrix jacchus ENSCJAG00000008993 N 0.000
SCAF4 Canis familiaris ENSCAFG00000008863 N 0.000
Q6JDJ9_CANFA Canis familiaris ENSCAFG00000000570 N 0.000
SFRS15 Bos taurus ENSBTAG00000018855 N 0.000
SCAF4 Echinops telfairi ENSETEG00000000583 N 0.000
SCAF4 Felis catus ENSFCAG00000002228 N 0.000
SCAF4 Homo sapiens ENSG00000156304 N 0.000
SCAF4 Macaca mulatta ENSMMUG00000001712 N 0.000
SCAF4 Myotis lucifugus ENSMLUG00000011472 N 0.000
SCAF4 Meleagris gallopavo ENSMGAG00000014515 N 0.000
SCAF8 Meleagris gallopavo ENSMGAG00000012762 N 0.000
SCAF4 Loxodonta africana ENSLAFG00000010710 N 0.000
SCAF8 Loxodonta africana ENSLAFG00000000022 N 0.000
SCAF4 Gorilla gorilla ENSGGOG00000015557 N 0.000
SCAF8 Gorilla gorilla ENSGGOG00000008645 N 0.000
Q5F447_CHICK Gallus gallus ENSGALG00000015850 N 0.000
RBM16 Gallus gallus ENSGALG00000013635 N 0.000
SCAF8 Gasterosteus aculeatus ENSGACG00000006909 N 0.000
SCAF8 Homo sapiens ENSG00000213079 N 0.000
SCAF8 Anolis carolinensis ENSACAG00000005282 N 0.000