CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
ENSOCUG00000010180
(
Oryctolagus cuniculus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSOCUG00000010180
T03051_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000008772
CCCH ZF
1
20
RYFLHGVCKEGDNCRYSHDL
ENSOCUP00000008772
CCCH ZF
24
49
PYGVVCKYFQRGYCIYGDRCRYEHSK
ENSOCUP00000008772
CCCH ZF
147
172
TKKQLCPYAAVGECRYGENCVYLHGD
ENSOCUP00000008772
CCCH ZF
305
330
NKACRYFDEGRGSCPFGGNCFYKHAY
Links
Other
CCCH ZF
family RBPs
Other
Oryctolagus cuniculus
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AT1G60200
Arabidopsis thaliana
AT1G60200-TAIR-G
N
0.000