ENSCING00000012468 (Ciona intestinalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCING00000012468 T35433_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.757
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000023253 RRM 103 172

Links

Other RRM family RBPs
Other Ciona intestinalis RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPN1 Homo sapiens ENSG00000100836 D 0.732
Q9DDY9 Xenopus laevis Q9DDY9 I 0.718
GJ22134 Drosophila virilis FBgn0209248 I 0.000
GD10545 Drosophila simulans FBgn0182316 I 0.000
GM21011 Drosophila sechellia FBgn0175892 I 0.000
GL17107 Drosophila persimilis FBgn0154711 I 0.000
GI19259 Drosophila mojavensis FBgn0141998 I 0.000
GH21908 Drosophila grimshawi FBgn0129369 I 0.000
GG23338 Drosophila erecta FBgn0115489 I 0.000
GF13666 Drosophila ananassae FBgn0090694 I 0.000
GA15278-RA Drosophila pseudoobscura FBgn0075302 I 0.000
Pabp2 Drosophila yakuba FBgn0068105 I 0.000
Pabp2 Drosophila melanogaster FBgn0005648 I 0.000
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.732
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.786
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.786
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.732
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.732
GK23192 Drosophila willistoni FBgn0225154 I 0.000
PHUM037550 Pediculus humanus PHUM037550 I 0.732
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.718
AAR26262 Xenopus laevis AAR26262 I 0.718
AAH73657 Xenopus laevis AAH73657 I 0.718
AAH45063 Xenopus laevis AAH45063 I 0.718
AAG36902 Xenopus laevis AAG36902 I 0.718
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.718
Smp_007630 Schistosoma mansoni Smp_007630 I 0.000
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.732
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.746
Sjc_0053490 Schistosoma japonicum Sjc_0053490 I 0.000
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.786
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.786
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.704
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.746
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.704
e_gw1.29.77.1 Phycomyces blakesleeanus e_gw1.29.77.1 I 0.000
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.761
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.732
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.732
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.732
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.732
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.732
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.732
CRE07990 Caenorhabditis remanei CRE07990 I 0.000
CPIJ004581 Culex quinquefasciatus CPIJ004581 I 0.000
CBN10290 Caenorhabditis brenneri CBN10290 I 0.000
CBN00953 Caenorhabditis brenneri CBN00953 I 0.000
CBG03741 Caenorhabditis briggsae CBG03741 I 0.000
AGAP005117 Anopheles gambiae AGAP005117 I 0.000
AAEL015143 Aedes aegypti AAEL015143 I 0.000
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.718
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.000
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.729
LOAG_03634 Loa loa LOAG_03634 I 0.729
CpipJ_CPIJ004581 Culex pipiens CpipJ_CPIJ004581 I 0.000
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.732
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.732
pabpn1 Danio rerio ENSDARG00000045373 I 0.771
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.732
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.786
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.732
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.732
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.718
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.732
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.732
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.718
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.732
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.704
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.732
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.732
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.786
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.718
LOC100055599 Equus caballus ENSECAG00000011652 I 0.732
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.732
Bm1_48895 Brugia malayi Bm1_48895 I 0.729
estExt_Genewise1.C_11041 Mucor circinelloides estExt_Genewise1.C_11041 N 0.000